Pseudomonas synxantha BG33R, PseBG33_4966 (oprG)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCTAATATGAAGCCGCTGCACGACCTGTCAAACATGGCCGATGCCTTGTCCGTCGAGGCGGCGCCGGCGGCCAAGCAGGATCTGCCCAACGCGCCGGTG GTGCAGAGCCTCGACGGCCAGCACATCCGCCTGCCGGGGTATATCGTGCCACTGGAAGTCAGCGAAGAAGGCCGCACCACCGAGTTTCTGCTGGTGCCGT ATTTCGGCGCGTGCATCCACGTGCCGCCACCGCCGTCGAACCAGATCGTGCATGTGAAAAGTGAAGTCGGGGTGAAACTCGATGAGCTGTACCAGCCGTA CTGGATCGAAGGCGCGATGCAGGTCAAGCCGTCGTCGAGTGAACTGGCCGACGCCGGTTACCAGATGGATGCCGAGAAGATTTACATGTACGAGCTGCAG GAGTAGCGCTGATCACCCTTTCATTGAGCTGAGTCAAAAGACCGAGCGGAACGATCTTTACCATTGGACGTACAACTTTTAAACGTCCTTTGGAGCTCCC
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| DNA Sequence for Gene |
>PseBG33_4966
|oprG
ATGAACAAGTCTCTGCTCGGCGCGTCCCTCTTCGCGCTCGCCCTCGTCGCCCCGGTCGCACACGCTCACCAGGCGGGCGATATTCTGGTGCGTGCCGGTG CAATCACCGTCAACCCGGAGGCCGACAGCGGCAAGGTCAAGGTTGACCAGGGCCCGCTGGCCGGCACCAACCTGGGCGGCAAGGCGACCATGAGCAGCGA CACCCAACTGGGCTTGAACTTCGCCTACATGATCACCGACCACGTCGGTATCGAATTGCTGGCCGCTACACCGTTCGAGCATGACGTGAAACTCAAGAAC ACCGCACTGGGCGCCGCCAACGGCAAGCTCGGCTCGCTCAAGCACCTGCCGCCGACCCTGAGCGTCGTGTACTACCCGCTGGACAACAAGTCGGCATTCC AGCCGTACGTGGGCGCCGGTATCAACTACACCTGGATCTACGACGAACACGTCGGCGGTCGCGCTCAACAAGCCGGCTTCAGCAACTTCAAGGCCGAAAA CTCCTGGGGCTGGGCCGCACAGATCGGCGCCGACTACATGATCAACGACAACTGGATGATCAACGCCCAGGCGCGCTACATCGACATCAGCACCAAGGCG ACTGTGGATAACAATGCGCTGGGCCAGGGCACTCGGGCCAAGGTCAATGTGGACGTGGATCCGATGGTTTACATGGTGGGTATTGGTTACAAGTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAACACTGCATAACCCATGTGGGAGGGGGCTTGCTCCCGATAGCAGAGTGTCAGTCAACAGATTCATGGACTGACCCATCGCTATCGGGAGCAAGCCCC CTCCCACATTTGGTTTTGTAGCGTGTCAGCTGTGGCGGTAGAACCGGTCCAGCAACGCCGGAAGTCCCGCCCGCCATGCCCTGGGCTTGATGCCGAAGGT ATGCAGGATTTTCTTGCAGGCCAGCACCGCGTGCTGCGGTTCCTCTGCCGCATCCGGCCGGGCCGCATGGGCCTGGGCAGTCGGCGACTCGATCGCCAGC GGGTGGAAGTTGCGCGCTTCGGTCAGAATCGCCTGGCCCAGCGCCAACGGCGTAGTCGCCTCATGCCCGGCGTAATGATAGGTGCCCCAGAGCGGCGCCG CGCAATCAAGCTGCTTGAGCACCGAGATAATCACCCGTGCGGCATCGTCTACCGGCGTCGGGTTGCCACGACGGTCGTCGGCCATCAGTAGTTCATCGGG
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| Amino Acid Sequence |
>outer membrane protein W
MNKSLLGASLFALALVAPVAHAHQAGDILVRAGAITVNPEADSGKVKVDQGPLAGTNLGGKATMSSDTQLGLNFAYMITDHVGIELLAATPFEHDVKLKN TALGAANGKLGSLKHLPPTLSVVYYPLDNKSAFQPYVGAGINYTWIYDEHVGGRAQQAGFSNFKAENSWGWAAQIGADYMINDNWMINAQARYIDISTKA TVDNNALGQGTRAKVNVDVDPMVYMVGIGYKF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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