Pseudomonas synxantha BG33R, PseBG33_4440 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATCAGCGACGCCGACCAGCCAATCGGGGTGCCGTCATCCTGCACCACTCGCAGGCCCATGACCTGCTTGCCCGGCGAGCAGCCCTGGTTGAGCACTTCA AACAGCACCATGTACCACCAGCTCACCAGGAACAGCAGAAGCGACCCCAGCCCGAGGCCAATATTGCCCAGCAGCGCCAGGGGCACCAGCAGGATGCCCA TGATGATGCCACGCACACCCAGGTCGAATGCAAAGGCCAATGCCCGGGATGGCAGGCCGGCAGGGCGCAAGGGCAGGTCGATCCCCTCCGGGGTCTCGAT TTGGTAATGGGTATCCAAAGGAGCTGGCGGCATTGCGATCCCTGGCAGTGCAAAGCGGTTAGGAGACACGGATGCTAGCAGTGTCGACGCTGGAAGCAAC CATTCAAGGTTTTACTGGATATTTATACAGTAAAGGTATCGCTGGCCCCAGACACCTTGCAGCGCCTAGACTTTGTCGGTCTTCAGCACAGGAATAGCCC
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| DNA Sequence for Gene |
>PseBG33_4440
|sbcB
GTGACCTCGATTTTCTGGTACGACTATGAAACCACCGGCATCAACCCGCGCAACGATCGCCCGCTCCAGGTTGCCGGTATTCGCACCGATCTCGAACTCA ACGAGGTCGGCGAGCCGATCAATCTTTATTGTCAGCCCGGCGACGATATTCTGCCCCATCCGGCTGCGTGCGCGATCACCGGGATCACGCCAGGCGTCCT GGCACAGAAGGGCCTTGCCGAAGCCGACTTCATGACCCGGGTGCACGCCGAGCTGGCCGCGCCAGGCACCTGCGGCGCCGGTTACAACACGCTGCGGTTT GACGATGAAATGACGCGCTACAGTCTGTACCGCAATTTTTTCGACCCTTACGCGCGCGAGTGGCAGGGCGGTAACAGCCGTTGGGATTTGATCGACGTGA TGCGCACTGCCTATGCGCTGCGGCCGGAGGGCATTATCTGGCCTGAGCAGGACGGGCGCGTGACGCTCAAGCTGGAGCGGCTGACCCACGCCAATGGTAT CGACCATGGTCAGGCACACGATGCGTTATCTGATGTGCGTGCAACCATCGCCCTGGCGCGATTGGTTCGGCAAAAGCAGCCCAGGTTGTACGAGTGGTTA TTTCAACTGCGCAGCAAGCAGCGAGTTATGGATGAGGTGCGGTTGTTGCAACCGATGGTGCATATCTCCGGGCGTTTTTCCGCCGAGCGCCATTACCTGG GCGTGGTCTTGCCCCTGGCCTGGCACCCGCGCAACCGCAATGCGTTGATTGTCTGCGACCTTGGGCTCGACCCACAGGGGTTGCTGGAGCTGGATGCACA GACCTTGCGCGAGCGCCTCTATACGCGCCGTGATGAGTTGGCGGACGGTGAACTGCCGGTGCCCCTCAAGTTGTTGCATATCAACCGCTGCCCGGTGGTA GCACCGTTGAAGGTGTTGCGTGCGCAAGATCGCGAGCGTCTGCAATTGGATATGAGCACCTATCAGGCGCGGGCGCTGCGGCTAACTGACGCACAGGAAG TTTGGCGCGACAAGTTGGCGGCCATTTATGCCGAGGAGGACTTTGCCTCGAATGCAGACCCGGAGCAGCAGCTCTACGATGGCTTTATTGGCGATCGGGA TCGCCGGTTATGTGAACAAGTTCGCATGGCAGAGCCCGCTCAATTAGCACATCAATCGTGGCCGTTCGATGATCATCGTTTGCCGGAATTATTATTTCGC TATCGTGCACGTAACTTCCCTGAAACCTTGAATACAGAGGAGCAACAACGCTGGAGACTTTTCTGTCAGCAACGTTTGTCAGATCCGCAGTGGGGAGCAC CGAATACCCTGATGGCATTTAAGCAGGCGCGCGAGGAGTTGGCGCTTAGTGCCACCTCATTTCAGTGCCAGGTGCTGGATCAATGGCAGGAGTATGCCGA TTCTTTAGCGGCCCGCCTGAGCCTGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTGGTAATTGCTGAGTATTCAGACAATAAAAAACGCCAGCAAGCTGGCGTTTTTAATGTGTAGCGTATCGGGTGAACGTCCGACCAGGCTTAGCCCAGC AGAGTCGCCCAACCTTCAACTACGTCACCGCCCCACTTGGCTTTCCACTCTTTCAGAGTTTTGTGGTTGCCACCTTTGGTTTCAATCACTTCGCCGTTGT GCGGGTTTTTGTATTGCTTGACTTTGCGAGCACGCTTGGTGCCAGTAGTTTTTACAGCGCCGCGCGGCGCTTTAACTTTCGATTCTGGATCCAGCAGCGC GATGATGTCACGCAGGGATTTGGAGTATTCACCCATCAGGGTGCGCAGTTTGCCTTCGAATTCCAGCTCGGTTTGCAGCTTGTCGTCTTGGGACAGGTTC TTCAAACGGGCTTGCAGCTCTTTGATTGCTTCTTCGGTGGCGCGGTATTCGTTGATCAGGGACATGTGGACTACCTTATGTAGAACGCTGATTGACAGGG
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| Amino Acid Sequence |
>exonuclease I
MTSIFWYDYETTGINPRNDRPLQVAGIRTDLELNEVGEPINLYCQPGDDILPHPAACAITGITPGVLAQKGLAEADFMTRVHAELAAPGTCGAGYNTLRF DDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVMRTAYALRPEGIIWPEQDGRVTLKLERLTHANGIDHGQAHDALSDVRATIALARLVRQKQPRLYEWL FQLRSKQRVMDEVRLLQPMVHISGRFSAERHYLGVVLPLAWHPRNRNALIVCDLGLDPQGLLELDAQTLRERLYTRRDELADGELPVPLKLLHINRCPVV APLKVLRAQDRERLQLDMSTYQARALRLTDAQEVWRDKLAAIYAEEDFASNADPEQQLYDGFIGDRDRRLCEQVRMAEPAQLAHQSWPFDDHRLPELLFR YRARNFPETLNTEEQQRWRLFCQQRLSDPQWGAPNTLMAFKQAREELALSATSFQCQVLDQWQEYADSLAARLSL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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