Pseudomonas synxantha BG33R, PseBG33_3301
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCCTACGCGCTGCACACACCCGCCCTGCAAAGCAAAGGCGTGAAGGTCTTTGTACTGGCCGAAGACATGCAGGCGCGCAACCTGCCGCTTCCCGACTGG GCTGACAGCGTGGATTATCCAGGTTTCGTGCAACTGTCGATCGACTACGACAAGGTCAACACCTGGCTATGAACACCCTGACCGTCGGCACACGCAGCCT CGAACTGGACAAGGACGGTTACCTCGTCGACCTCAATGACTGGTCCGATGAGGTGGCGCACGCCCTGGCCGCTGCCGAAGCCCTGGAGCTGACCGCGGAT CACTGGGAAATCCTCAAGCTGCTGCGCCAGTTCTATACCGAATTCCAGCTGTCCCCCGCCACACGCCCGCTGATCAAGTACACCGCCTTGAAACTGGGTC CGGAAAAGGGCAACAGCCTGCGTCTAAACAAACTGTTCAACGGCACTCCCGCCAAACTCGCCGCCAAGCTGGCGGGCCTGCCCAGGCCGACGAATTGCTT
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| DNA Sequence for Gene |
>PseBG33_3301
ATGACCGACTTCACCCCATTGACCCTCAACACGCCCGAAGAGCACCCTTTTGCCCAGTTCGTGCGCATCCTCGGCAAAGGCAAGCGCGGCGCGCGCAACC TCACCCGCGAAGAAGCGCGGCAAGCCATGGGCATGTTGCTCGACGAAAAGGTCGAGGACACCCAGCTCGGCGCCTTTTTGATGCTGCTGCGTCACAAGGA AGAGAGCCCGGAAGAACTGGCCGGTTTCACCGAAGCGGTACGTGAACGCCTGGATGCACCGGCGTTGAACGTGGATATCGACTGGCCGACCTACGCCGGC AAAAAGCGCCATCTGCCGTGGTTTCTGCTGGCGGCCAAATGCCTGGCGCAAAACGGTGTGCGCATTCTGATGCACGGCGGCGGTGCCCACACGGCGGGCC GCCTGTACACCGAGCAACTGCTGGAGACGTTGCGGATCCCGCTGTGCCGCAATTGGCAGCAGGTGGGAAGCGCCTTCGAGCAGGGCAACCTGGCCTTTAT CCCGCTGGGCGACTGGGCGCCGCAATTGCAACGCATGATCGACCTGCGCAACACCCTCGGCCTGCGCTCGCCCATTCATTCCCTGGCGCGGCTGCTTAAC CCGCTGAATGCGCGCTGCGGCCTGCAAAGCATTTTCCACCCGGGCTACCAGGGCGTGCACCGCGATGCCAGCGGCCTGCTCGGGGACAATGTGATCGTGG TCAAGGGCGACGGCGGCGAGATCGAAATCAACCCCGACACCCTCAGTCACCTGTATGGCACCACCGGCGGCCAGAGTTGGGACGAAGAGTGGCCCGCCCT CTCCGCCCAGCGTCACGTCAAACCGGCGACGCTTGAGCCTGAACAGTTGAACGCGTTGTGGCGCGGCGAAGTCGAGGACAGCTACCCGCAACTGGCGCTG ATCGCCACCATGGCCCTGGCGTTGCGCGGTCTCGGCCACCCGCGGCAACAGGCCTTCGAATTGGCCCAGCAATACTGGGATGCACGGGATAAATCGATTT AG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGATCATTCACCCCCGGTCTTTGCGCTTTTAGTTCGAACTCATCCCTTTAGACTGGACTCCAACGTTTAACAGCCAAGGAGCCAGTCATGGGTTTGCTG ATTGAAGGACAGTGGAAAGACCAGTGGTATGAAAGCAGCGCAGATGGCGCTTTCCAACGGGAACAGGCACAACGTCGCAACTGGGTGACCGCCGATGGCG CGCCCGGCCCGAGTGGCGAAGGTGGCTTCAAGGCTGAGGCCGGCCGCTATCACCTCTACGTGTCCCTGGCCTGCCCCTGGGCGCACCGCACCCTGATCCT GCGCAAGCTCAAAGGTCTGGAAAGCCTGATCGACGTGTCAGTGGTCAGCTGGTTGATGCTGGAAAACGGCTGGACCTTCGACAAGGCCCACGGCTCCAGC GGTGACAAACTGGACGATCTGGCCTTCATGCACCAGCGCTACACCGCCGATACGGCCGACTACACCGGGCGCGTCACCGTGCCGGTGCTGTGGGACAAAA
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| Amino Acid Sequence |
>hypothetical protein
MTDFTPLTLNTPEEHPFAQFVRILGKGKRGARNLTREEARQAMGMLLDEKVEDTQLGAFLMLLRHKEESPEELAGFTEAVRERLDAPALNVDIDWPTYAG KKRHLPWFLLAAKCLAQNGVRILMHGGGAHTAGRLYTEQLLETLRIPLCRNWQQVGSAFEQGNLAFIPLGDWAPQLQRMIDLRNTLGLRSPIHSLARLLN PLNARCGLQSIFHPGYQGVHRDASGLLGDNVIVVKGDGGEIEINPDTLSHLYGTTGGQSWDEEWPALSAQRHVKPATLEPEQLNALWRGEVEDSYPQLAL IATMALALRGLGHPRQQAFELAQQYWDARDKSI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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