Pseudomonas synxantha BG33R, PseBG33_3129 (tssK2)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGGATGATATTCATGTATCGAGCCACCCGCGCTTTGGTGTTGCTTTTGTCTGGTTTCCTGGCGGGTTGCAGCGCCGTATCGCCTTTTTCCACGCTGACC AAGCTGGACGTGGTGTTGACCGCCAACGAGCACGTCAACCCCGACCTGCACGGTCGCCCCTCTCCCGTGGTGGTGCAGTTGATCGAACTGCGCCATGGCG TCGCCTTCGAACATGCCGACTTCTTCAGCCTGTATGACAAGGCGCAGCAATTGCTGGCAAAGGACTGGGTAAGCAGTGAAGAAGTCGAGCTGCGTCCAGG TGACCGCCTGGCGCTCAAACTCCGTATCGGTCCCGACAGTCGTTTTGTGGGGGTGTTGGCGGCTTACCGAGACTTGCCGCACGTTCAATGGCGGCAGTTG ATCCCCGTGACTCTGCACCAGCGCAACCGTGCCGATCTGGTGCTGGACCAGGACGGCATACGCGTTGTCGACTCGCTCGCCGTGATGGAGGTGCGCTGAG
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| DNA Sequence for Gene |
>PseBG33_3129
|tssK2
ATGCCTGTTCATAAAGTGATCTGGCAAGAAGGCATGTTGCTGCGGCCACAGCACTTGCAGCACAACGACCGCTATTACCAACAGCAACTCAACCAGACGC GCTTGTTGGGCAGTGATGCCTGGGGCTTCCTTACCCTGGAGTTGAATGAGCAATACCTAAAGCTGGGCAAGCTGGTGGTCAACCAGGCAAGTGGCGTCTT GCCGGACGGGAGCTTGTTTGATTTGAGTACCGCTATGGAACCGCTGGTGTTGCAGGTGCCAACTGATGCGGGAAGGCAGGGCATTTACCTGGCACTGCCC CTGGCCAGCGGCAATCACCTTGAGGTTCGCCAGCCTGAACAGAGCGATGTTCTGGCGCGTTACCTGCGATGCGAAGTGGAAGTGGGAGACTCCAACCTGG GTGTAGATGCGCGTTGCCGAATCAGCTGCGCACGGCCCGACTTACGCCTTGTATTGGGCGAGCAAACGGGTGATCAGAGCTTCGTCAAACTCAAGGTTGC CCAGGTACTGGATGTCAGCGGTGAAGGGGGCGTGAGCCTGGATAACGCGTTCATTCCGACCTTCATTTTCGTGCAGGAGCATGGCTACTTGGCGTCGTGC CTTAACGAAGTCGTCGGTCTGCTTGCCAGCCGTGGCGATGCCATCGCGGCGCGCATTCGTGGCGAGAGCACGGCTGCAAGCACACAACTCGGTGATTTCC TGATGCTGCAGGTGATCAATCGTACCGAACTCGCGCTGCGGCACTGCCTGAGCCAGGCCCAGGTTCGGCCTGAAGCGCTGTTCCGCCTGTTGGTGTCGAT GCTCGGCGAGCTATCAACGTTCGCCTGTGACAGTAAACGCGCGCAGCTGGACGTGCATTATCGACACAGCGACCAGGGCGCCAGTTTTCGTGGGCTGATG GAGCGCGTACGCGCCGTCCTGTCGGTGGTGCTTGAGCAACATGCGATCGAATTGACATTGCAACCACGCCAGTACGGCGTTCTGGTCTGCCCGGTCAGCG AGTTGAAATTGCTCGGCACGGCCACGTTCATCCTGGCAGCCACCGCGCAGTGTGAGGCAGAGGAACTGCGCCAGCGCCTGCCGGCCCACCTGAAAGTCGG GCCGGTAGAGCGCATACGTGAGTTGGTCAACCTGCACCTGGCCGGTATCAAGGTCAAGCCGCTGCCAGTGGCGCCGCGGCAGATTCCGTTTCATGCCGGC AAGACCTATTTCATCCTCGATATGAGTGCCCCCGAGATCGCGCAATTGCAGCAGTCGGGCGGTTTCGCGTTCCACGTAGGCGGTGACTTCGCCGGGCTTG AACTCAACTTTTGGGCCATCAGGAATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGCCATGGACAGTGAGTACACACAGGATGAAAGAACCGTCCTGCTCGACCGTGAGGGTCATGGGCCTGCACAGGGGCCATTGACGGACTTCCCATCGCC GCCACGCTATGAGCAGCTGGAAGATCGCATGATCTATGCCGGCCGTATGCTCGATGCGTCGAGCTTCAAGGCCGGGCTCAACCCGCTGGTGGCTGCGGCT TGGGCGGTGTTGTCCGAGATCGTGGCGCTCAGGGTCTGCTCTGGTCGCGAAGACCTGGGCACGCTCAACGACCGATTGTCATTGGCGGTGACTCAATTCG AAACCCGCGCCTTGCAGGGCGGTGTTGAAAGCAGCCAAGTCATGTCGGCGCGTTATGTGTTGTGCAGTGTGATCGATGAGGCGGTTGTTACTACGGCGTG GGGGGCACAGAGTGAATGGTCGAAGGTGAGCCTGTTGAGCCGCTTTCATAACGAAACTTTCGGCGGCGAAAAAGTTTTCCAACTGCTGGAGCGTCTATCA
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| Amino Acid Sequence |
>type VI secretion protein
MPVHKVIWQEGMLLRPQHLQHNDRYYQQQLNQTRLLGSDAWGFLTLELNEQYLKLGKLVVNQASGVLPDGSLFDLSTAMEPLVLQVPTDAGRQGIYLALP LASGNHLEVRQPEQSDVLARYLRCEVEVGDSNLGVDARCRISCARPDLRLVLGEQTGDQSFVKLKVAQVLDVSGEGGVSLDNAFIPTFIFVQEHGYLASC LNEVVGLLASRGDAIAARIRGESTAASTQLGDFLMLQVINRTELALRHCLSQAQVRPEALFRLLVSMLGELSTFACDSKRAQLDVHYRHSDQGASFRGLM ERVRAVLSVVLEQHAIELTLQPRQYGVLVCPVSELKLLGTATFILAATAQCEAEELRQRLPAHLKVGPVERIRELVNLHLAGIKVKPLPVAPRQIPFHAG KTYFILDMSAPEIAQLQQSGGFAFHVGGDFAGLELNFWAIRN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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