Pseudomonas synxantha BG33R, PseBG33_2440
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF00440
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ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:1.10.357.10 | Tetracycline Repressor, domain 2 | - | - | 1 | 194 | 3.3E-60 |
| Pfam | PF00440 | Bacterial regulatory proteins, tetR family | IPR001647 | DNA-binding HTH domain, TetR-type | 16 | 62 | 2.9E-14 |
| PRINTS | PR00455 | TetR bacterial regulatory protein HTH signature | IPR001647 | DNA-binding HTH domain, TetR-type | 16 | 29 | 5.3E-9 |
| PRINTS | PR00455 | TetR bacterial regulatory protein HTH signature | IPR001647 | DNA-binding HTH domain, TetR-type | 37 | 60 | 5.3E-9 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | IPR009057 | Homeobox-like domain superfamily | 3 | 84 | 1.74E-19 |
| PANTHER | PTHR30055 | HTH-TYPE TRANSCRIPTIONAL REGULATOR RUTR | - | - | 2 | 189 | 3.0E-20 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.