Pseudomonas synxantha BG33R, PseBG33_2246 (nfxB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTTCGCCCTGTGCCCGTGATGCGGCGGCCTTGAGGGGGGCAGGGTCGATCTGGAACAACAGGTCGCCGGCCTTGATCTCGGCGCCTTCCTCGAAGTTGCG TCGTAACACGATCCCGGCTACCCGGGCCCGTACCTGGGCCACCCGGACTGGCTCGATACGCCCCGGCAATTCTGCGGACAGGGAGAAGGCTTCGGGAGCG ACAGTCACGGTCTCCACTTCCCGGGGTTGCTGGGCAGCCTCGGGCTGATCGGGAGCACCACAGCCGGCGAGGCCGACAAGGGCCAGCGCAGCAAAGCTGA AAATACGCAGGTCGCGCAAAGCGTTCATGTGTCACCTGGAGGCTAGGTCTGGAAAGGTGCGCATGATATATACATGGATCTATTGAGATAATAATGTCTC AAAAGATTCTTTTGTGTTTAAAAGTGTCATTTCCCTTGAGGTCGGGGGGAATTTCGGCACAATGCCTTCCACTTCACGTCCGACCAATGAGCCTGTTGCC
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| DNA Sequence for Gene |
>PseBG33_2246
|nfxB
ATGTCTTCGCCCGCCCCCAATGAAAAACTTCTCAAGGCCCTGGCGGTTGCCATCGTTGACCATCCCCGGGCCACGCTCCAGGAGCTGGCGCGTGCGGCAG GCATCAGCAAGGCCACGTTGCACCGCTTCTGCGGCGCGCGGGAACACCTGATCGAGATGCTGTTGGCGTACTCGCGTGAGCTCATGCAGCAGGTGGTCGA CGACGCAGATCTTGAGCGCGACGCGCCGGCCGAGGTCCTGCGTGGCCTGATCGACAAGCACTTGGCCCATCGTGAGTGGGTGTTGTTCATGGTGTTCCAG TACCGCCCGGACACCTTGAACAATCACGGTTGGCAACCGTACCTGAACGTCCTGGACCGCTTCTTCCTGCGGGGGCAGCAGGCTGGTGTGTTTCGCATCG ATATCACAGCGGCGGTCATGACCGAGCTGTTCACATCGCTACTGTGTGGCCTGGTCGAGGCAGAGCGCCTGGGCCGGGCCGCACCGGCGGGGACGGCCTG GGTGATGGAGCAGATGTTCTTGCACGGTGTGAGCGCTGCGCCGCCGCACTCAGCGTTGTCGCAGGGTCTGCGAGGGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCGCCAAACAGCGCCTTGTACTGACCGGCAAAGTGGCTCAGGTGGTAAAAGCCCCATTGGGCCGCCGCGTCGCCAATGCTCAATTCGGCCGGCGACGAC ATGACCAGGCGGCGCCGCACCGCATTCAGGCGCACGCTGCGCAAGTAGTCCGCGGGGCTGGTGCTGGTGATGGTCTGGAAGCTGTATTGCAGGGCACGCC GGCTGACGTGCAGGCGTTCGCACAGATCGACAATGGTGATGGGCTCGTCGTGGCTTTCGAGGGCGATCTGCTGGCTCATCTTTACCAGGTACTGGCGCGT GGGGGTGCTGGGCCGCAGACGTTTTTCAGGGTTCTCGACGCTCCCCAGCAGATCGAGGAAACCACTGAGCAAGCCATGTTCCATGAGTTTGGCCGTGGCT TCATTGAAGTGTTGCGGCGGGCAATCCAGTGCCTGGCCAAGTTGCAGGCGTACACGCTGGTACACCTCACGGGTGCGCTGCCATGGCGACTGCAGCGACG
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| Amino Acid Sequence |
>transcriptional regulator
MSSPAPNEKLLKALAVAIVDHPRATLQELARAAGISKATLHRFCGAREHLIEMLLAYSRELMQQVVDDADLERDAPAEVLRGLIDKHLAHREWVLFMVFQ YRPDTLNNHGWQPYLNVLDRFFLRGQQAGVFRIDITAAVMTELFTSLLCGLVEAERLGRAAPAGTAWVMEQMFLHGVSAAPPHSALSQGLRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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