Pseudomonas synxantha BG33R, PseBG33_2018

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTTCGCGAGCAAGCCCGCTCCCACATTTGGATCGCGGGGTGTCAGGTAGAGAAGCATCGCCTGTCAGGCCGCCATCGCAGGCAAGCCAGCTCCCACAATT GGATTGTGAGGTGTCAGGTAAATGAGCATCGACTGGCAGGCCGTTACGGGAGCAAGCTCCCTCGCCACACAGAAACCTGCTTGGCTTCCCGCGTGTCGTC AGGCAGGACGTGACATCACCGCCAAGCGCACGGCCAGCGCCATCAACACTGCCGCCAACCTCCACTTCTGCAGCCAGGCGCTTTTGGTGCGTTTGGCGAA GAAGCGGCTGAGCGCCCCGCCAAACATGCCCAGCAGTAGGTGAAACACACTCGCGATCAGCGTCAGCACGGCGCTCGCAGGCTCTACAAAAAATTGTGCT GGATACATTACTGACGCAGCGAACCAGTGATTGCTGAATGCCACAACCAACGTCTAGAATGCGAAACATTATCAATTAAGCCTGCTGCGCCAGGATGACC
DNA Sequence for Gene
>PseBG33_2018
ATGTCGAGCGATCACCCACTGGACCATGCCGCCATCGGCCAGCTTTACCAAGCCCACCATTCCTGGCTGCGCGGCTGGTTGAGCCGACGCACCGGCTGCC GTGAACACGCCGCTGACCTGGCGCAGGAAACCTTCGTGCGCCTGCTCAACGCGCGCAAGCAACAGACCTTGCAGCAGCCGCGTGCTTACTTGAGCAGCAT CGCGCGCAGTTTGATGATCGACCAGTACCGACGCCGCGAACTGGAACGTGCCTACCTGGAAAGCCTGGCGCACTTTCCTCAAGTCGAGGTGCCGAGCGAA GAAACCCGCCTGCTGATCCTCGACAACCTGGAGCGCATCGACCGTTTGCTCGACCAGCTCAAGCCACGGGTGCGCGAGGCGTTTCTGTTGGCCCAACTGG ACGGCCTGACCTGCCCGCAAATCGCCCTGCGCCTGGGCGTGTCCAAGGCCACGGTGGAGCGCGATCTGTCCAAGGCCCTGCACGCTTGTTATCGGTTGCG TTATGCCGAATGCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCCGCGCCTGGTGGACCAGGCCATCCAGTGGATGATCAAGCTGCGCTTCAACACCGCTGACGACGCCAGTACGGCGGCCTTCGAACAGTGGCTGCACACC AGCGCCGCGCATCAACTGGCGTGGCAGCGCGTGGCGACCATGAATGACGACTTCACCCAACTGCCGGCGCATGTCAGTCGCCATGCCCTCGATGGCGCGC GCCAACGTATCAGTCGGCGTGAAGGCTTGAAGCTGCTGGGGTTGTTGGCCGGCGCCGCCGGGTTGGCCTGGCTGGGTCGCGACTACACGCCCCTGCCCGC CCTGATGGCCGACTATCGCACCGCCACCGGCGAGCGGCGCTGGGTGGTGTTGAACGATGGCAGCAAGGTCCAGCTCAACAGCGCCAGTGCCATCGATATC ACCCTGAATGCCGAGCGGCGTCTGGTGAACCTGCGTCAGGGTGAAGTGTTGGTCAATACCGGCGCTGACAACCGTCCGTTCTGGGTGCACACCCGCGATG
Amino Acid Sequence
>RNA polymerase sigma factor
MSSDHPLDHAAIGQLYQAHHSWLRGWLSRRTGCREHAADLAQETFVRLLNARKQQTLQQPRAYLSSIARSLMIDQYRRRELERAYLESLAHFPQVEVPSE ETRLLILDNLERIDRLLDQLKPRVREAFLLAQLDGLTCPQIALRLGVSKATVERDLSKALHACYRLRYAEC
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site