Pseudomonas synxantha BG33R, PseBG33_1741 (ihfB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAACGAAGGCGTTCAGCCCAATGTCAGAACTGACTATAGTCTTTGAAGTGGCTATTTCGCGTTGCTGACTCAATAAGGGTTTGAATGAACAGGATTATCG TAATACTTGCATTGGTAGTGCTTGCCGGCTGCTCCTCCACCAGCGCCAAGACGCACGCCAAGCGAGGCGTCAGTGGCATCGAGATCGACTGCTCTGGCTT GGGTAATAAATGGGAGAAGTGCGAGAAGCGTGCTGCCCGTGAGTGCAAGATGCAGGGCTACAAAGTCATCACTCGCTCCAGTGATGCAGAGGATGAAGAG GGTGACTACCTGTTCGGCTGGAACCCGGCTGGCGCAGTGACGCGGACGATGTTGGTGATCTGTAAATGAGTAACAGTAGGGTGGCTGAAGGTGTTTATGC GGTCGGCAGATAAGTTTACACATGGGCTGTTCAAATTCATCAAGTCATGCTAAAACCTTCGAAGCGCTTTTCCTAGCTGCTTGAAAAAGAAGGGAAAAAT
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| DNA Sequence for Gene |
>PseBG33_1741
|ihfB
ATGACGAAGTCGGAGTTGATCGAACGAATTGTCACCCATCAAGGGCTGCTCTCATCCAAGGATGTGGAGCTGGCTATCAAGACCATGCTTGAGCAAATGT CCCAATGCCTCGCTACCGGAGACCGCATCGAAATCCGTGGCTTCGGCAGTTTCTCACTGCACTACCGCGCACCGCGCGTAGGCCGCAACCCAAAAACCGG CCAATCCGTCAGCCTCGATGGCAAATTCGTACCCCACTTCAAACCGGGCAAGGAATTGCGTGATCGGGTGAACGAAGAAGAGGAAGAAGGCGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTGTTTTTGGGGAAGGAGAAGGGTATGCGTGGGGTTAAGCGCGTTGTTGCGGTATTGATTGCAGTGCTTGCAGCTTTGGTGGTCTTGGCATTTGTGCTGG AGAACCAGCAGGGTGTGGCGCTGTCGTTCCTGGGTTGGAGTACTGCGCAGATGCCGGTGGCGGTGTTTGTGGTGGTGGCTTTGATTGTTGGGATGTTGAT TGGGCCAGTATTGGGAGTGTTTGTGCGTAGGCGTCAGAATAAGTCGATTGCTTGATTGTCTTGGGCAGGGATTGGATAAGCGGTGATCGTGACCGCTTGT CAGAAATCTCATGCCGTTCAAGGATTATGAATCGCTGCCGGTGCCTATTGGCGCAACCCGTAGATTGCGACAGTTCCTTGGCAAATTCAGAATCGCCCTA CATACATGTCAAGACTTGTAAAATGTCTGAGAGATGGCAAAATGGAATCTGTTCTCGATAACAGGCATTTTGTGCGCTCGAAATTCGGCAGAGACGCAGG
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| Amino Acid Sequence |
>integration host factor subunit beta
MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRVGRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEEEEEGV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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