Pseudomonas synxantha BG33R, PseBG33_1507 (emhB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGAGAAGGCCGGCGAAAACGCCGCCAAGGTCAAGCTGACCCTGGAAGACGGCACGCCTTACGCCCAGGACGGCAAGCTCGAGTTCTCCGAAGTGTCGGT CGACCAGACCACCGGTTCCGTGACCCTGCGTGCCGTGTTCCCCAACCCTGACCACGTGCTGCTGCCGGGCATGTTCGTGCACGCCCAGTTGCTGGCCGGT GTGAACAGCAAGGCCATCCTGGCTCCGCAGCAAGGCGTGACCCGTGACCTGCGCGGCATTCCGACGGCGCTGATCGTGAACAAGGACAACAAGGTCGAGC AACGCGAACTGGTTGCCAACCGTACCGCGGGTGCCTACTGGCTGGTGGAAAAAGGCCTCAATGCCGGTGACCGCGTCATCACCGAAGGCTTGCAATACGT CAAGCCGGGCGCCGAGGTGAAGGTCACAGAAGCTGCCAACGCTAAACCCGCCGGTACTGCTGCAGCGCCTGCTGCCGCCGCTGGTCAAGGGGAGTAATCC
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| DNA Sequence for Gene |
>PseBG33_1507
|emhB
ATGTCGAAATTTTTTATCGACCGCCCCATTTTCGCCTGGGTAATTGCCCTGGTGATCATGCTGGTCGGGGCACTCTCGATCCTGAAGTTGCCCATCAACC AATACCCGGCCATTGCGCCAACGGCCATTGATATCCAGGTGACCTACCCGGGCGCTTCCGCACAAACCGTGCAGGACACCGTGGTGCAGGTCATCGAGCA ACAGCTCAACGGTATCGACAACCTGCGTTATGTCTCCTCGGACAGTAACTCCGACGGCAGCATGACCATCACCGTGACGTTCAACCAGGGTACCAACCCG GATATCGCCCAGGTTCAGGTACAGAACAAGCTGAACCTGGCCACCCCACTGCTGCCCCAAGAAGTGCAGCAACAGGGTATCCGCGTGACCAAGTCGGTGA AGAACTTCCTGATGGTGATCGGTCTGGTGTCGGAAGACGGCAGCATGACCAAGGACGACCTCTCCAACTACATCGTGTCCAACATCCAGGACCCGATCTC CCGTACCGCGGGGGTGGGTGACTTCCAGGTGTTCGGTTCGCAGTACGCCATGCGTATCTGGCTCGACCCGGCCAAACTGAACAATTACCAGCTCACGCCA GTGGACGTCAGCAATGCCATCAAGGCCCAGAACGTGCAGGTGGCCACCGGCCAACTGGGCGGCCTGCCTGCCCTGCCCGGCACCCAACTGAACGCCACGA TCATCGGCAAGACGCGCCTGCAAAGCACAGAGGAATTCGCCAAGATCCTGATGAAGGTGAACACCGACGGCTCCCAGGTTCGTCTGGGTGACGTCGCGCG TATCGAACTGGGCGGCCAGAACTACAGCATCAGTGCGCAGTTCAACGGCAAGCCGGCCTCGGGTATGGCGATCAAGCTGGCGGCCGGTGCCAACGCACTG GACACCGGCAAGGCCATCCGCGAAACAGTGAAGTCCCTGGAGCCGTTCTTCCCGCCTGGCATGAAGGCGGTAGTGCCGTATGACACCACCCCGGTAGTGA CCGAGTCGATCTCCGGCGTGGTTCACACCCTGGTCGAAGCGATCGTGCTGGTGTTCCTGGTGATGTTCCTGTTCCTGCAGAACTTCCGCGCCACCATCAT CACCACCATGACCGTACCGGTGGTATTGCTGGGTACCTTCGGGATCCTGGCGGCGTGCGGCTTCACCATCAATACCCTGACCATGTTCGGCATGATCCTG GCCATCGGCTTGCTGGTGGACGATGCCATCGTGGTAGTGGAAAACGTCGAACGAGTAATGGCCGAGGAGCATCTGTCGCCCAAAGAAGCGACGATCAAGT CCATGGGCCAGATCCAGGGCGCCCTGGTGGGTATTGCCCTGGTACTGTCGGCGGTACTGCTGCCGATGGCGTTCTTCGGTGGCTCCACCGGCGTGATCTA CCGCCAGTTCTCCATCACCATTGTTTCGGCGATGGCGTTGTCGGTACTGGTTGCCCTGATCTTCACCCCGGCCTTGTGCGCCACCATGCTCAAGCCGATC GATCCGGAAAAGCACGGCCAGCCCAAGCGCGGCTTCTTTGGCTGGTTCAACCGCACCTTCGACAGCGGCGTACTCAAGTACGAGCGCGGCGTGGGCAACA TGATCAAGCACAAGATCCCGGCGTTTCTGGTGTATGTGCTGATTCTGGCCGGCATGATCTGGATGTTCACCCGTATTCCGAGCGCGTTCCTGCCTGAGGA AGACCAGGGTGTGATCTTCGCCCAGGTGCAGACACCGGTAGGCGCTTCGGCTGAGCGCACGCAAAAAGTTGTCGATGACATGCGCGCCTTCCTGTTGAAC GACAAGGAAGGCGAGCCAGGCGAAGGCAAGTCGGTGAACTCGGTGTTTACCGTAAACGGCTTCAACTTCGCCGGTCGAGGCCAGAGCTCGGGCCTTGCGT TCGTGATGCTCAAGCCGTGGGATGAGCGTGATTCGACCCAATCGGTATTCGAAGTGGCCAAGCGTGCCCAGGGTTACTTCTTCGGGGCCTTCAAGGACGC CATGGTATTTGCCATCGTGCCGCCTTCGGTGCTGGAATTGGGTAACGCCACCGGTTTCGACGTGTTCCTGCAAGACCAGGGTGGCGTCGGCCACGACAAG CTGATGGCTGCACGTAACCAGTTCCTGGGCGCGGCGGCACAAAGCAAGGTGTTGGCGGGCGTACGTCCTAACGGCGTGAACGATGAGCCGCAGTACGAGC TGACCGTTGACGACGAGAAGGCCAGTGCCCAGGGCATCAGCCTCGCGGACATCCAGCAGACCCTGGCCATCGCCTTGGGTGGCAGCTACATCAACGACTT CATCGACCGTGGTCGCGTGAAGAAGGTGTATGTACAAGGTGACGCCGCCAGCCGCATGTCGCCGGAAGACCTGGACAAATGGTACGTGCGCAGCGACTCC GGGAAGATGGTGCCGTTGTCGGCCATCTCGTCGGGCCAGTGGATCTACGGTTCGCCCAAGCTTTCGCGATACAACGGTGTAGCGGCGATGGAAATCCTCG GTACCCCGGCACCAGGCTACAGTACCGGTGATGCGATGGCCGAAGTCGAACGCATTGCCAAAGAACTGCCGGCCGGTGTCGGCTATGCCTGGACAGGCCT GTCGTACGAAGAACGCCTGTCCGGCTCCCAGGCGCCTGCGCTGTACGCGCTGTCGCTGCTGGTGGTGTTCCTGTGCCTGGCGGCACTGTACGAAAGCTGG TCGATCCCGATCGCGGTGATTCTGGTTGTGCCACTGGGTGTGATCGGTGCACTGATCGCTACCAGTATGCGGGGCTTGTCCAACGACGTGTTCTTCCAGG TGGGCTTGCTGGTGACAGTGGGTCTGGCGGCGAAAAACGCCATCCTGATCGTGGAATTCGCCAAAGAGCTGCACGAGCAAGGCAAAGGCATTGTCGAGGC GGCTATCGAAGCGTCCCGGATGCGTCTGCGCCCGATCATCATGACGTCCATGGCGTTCGTGCTCGGCGTACTGCCGCTGGCAATTTCCAGCGGTGCCGGC TCAGGCAGCCAGCACGCGATCGGTACCGGCGTGATCGGCGGTATGATCACCGCCACTGTGCTTGCCATTTTCTGGGTGCCACTGTTCTACGCAACCGTGT CCTCGGCCGGCGAACGCAAAAAGAAAGACACTACTGAAACTCCTAAAGAGGCTGGCCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAGTCGCTACTTTCCCTAGCCGTCACGGCATTCGTGCTCAGTGGCTGCTCGCTGATACCTGACTATCAGCGCCCCGATGCGCCGGTGGCCGCACAGTT CCCGCCTGGGCCGGCGTATTCGTCGGCCCAGGCGCCGAACCAGGCCGCTGCCGAGCAGGGCTGGAAGCAGTTTTTCCATGACCCTGCCCTGCAACAGCTG ATCCAGACCGCGTTGGTGAACAACCGTGACCTGCGTGTCGCGGCCCTGAACATCGACGCCTATGCAGCGCAGTACCAGATCCAGCGTGCCGACCTGTTCC CGGCGGTATCGGCCACCGGTAACGGCAGCCGTTCGCGCACCCCGGCCAAGCTGTCACAGACCGGCGAATCGTCTATCGCCAGCCAGTACTCGGCGGGCCT GGGGATCAGCTCTTATGAGCTGGACCTGTTCGGTCGCGTGCGCAGCCTGAGTGAAGAAGCACTGCAGAAGTACTTCGCCACTGAAGAAGCACGGCGCAGT
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| Amino Acid Sequence |
>multidrug transporter
MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPAIAPTAIDIQVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSDSNSDGSMTITVTFNQGTNP DIAQVQVQNKLNLATPLLPQEVQQQGIRVTKSVKNFLMVIGLVSEDGSMTKDDLSNYIVSNIQDPISRTAGVGDFQVFGSQYAMRIWLDPAKLNNYQLTP VDVSNAIKAQNVQVATGQLGGLPALPGTQLNATIIGKTRLQSTEEFAKILMKVNTDGSQVRLGDVARIELGGQNYSISAQFNGKPASGMAIKLAAGANAL DTGKAIRETVKSLEPFFPPGMKAVVPYDTTPVVTESISGVVHTLVEAIVLVFLVMFLFLQNFRATIITTMTVPVVLLGTFGILAACGFTINTLTMFGMIL AIGLLVDDAIVVVENVERVMAEEHLSPKEATIKSMGQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMALSVLVALIFTPALCATMLKPI DPEKHGQPKRGFFGWFNRTFDSGVLKYERGVGNMIKHKIPAFLVYVLILAGMIWMFTRIPSAFLPEEDQGVIFAQVQTPVGASAERTQKVVDDMRAFLLN DKEGEPGEGKSVNSVFTVNGFNFAGRGQSSGLAFVMLKPWDERDSTQSVFEVAKRAQGYFFGAFKDAMVFAIVPPSVLELGNATGFDVFLQDQGGVGHDK LMAARNQFLGAAAQSKVLAGVRPNGVNDEPQYELTVDDEKASAQGISLADIQQTLAIALGGSYINDFIDRGRVKKVYVQGDAASRMSPEDLDKWYVRSDS GKMVPLSAISSGQWIYGSPKLSRYNGVAAMEILGTPAPGYSTGDAMAEVERIAKELPAGVGYAWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYESW SIPIAVILVVPLGVIGALIATSMRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELHEQGKGIVEAAIEASRMRLRPIIMTSMAFVLGVLPLAISSGAG SGSQHAIGTGVIGGMITATVLAIFWVPLFYATVSSAGERKKKDTTETPKEAGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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