Pseudomonas synxantha BG33R, PseBG33_1477
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGCCAGTCCGTGTCTGAATTGCGGTGCCTGCTGTTCACACTTTCGCGTGTCTTTCTTTTGGGGTGAGTGCGCCTCATCCGGGGGCACGGTGCCCGATGA TCTGGTGGTGCAGATCAACCCGACCCGGGTGGCAATGATCGGTACCGATCAAAAGCCTGCGCGCTGTTGCAGCCTTGAGGGCGAAGTGGGCAAAAGCACC AGTTGCTCGATCTATGCACAGCGTTCGAGCCCGTGTCGCGAGTTCGATGCTTCCTGGAGCCAGGGTGTACAGAACGTTGATTGCGATGCTGCCCGTGCTG CCTTCGGCCTGGCCCCTTTGCAAGCTCCGCCGTTTGAACTGGACCTGCCCATCAGCGCTTAGCACCAAACGCTATGCACAGCATGACAAATTAATTGAGA TCAAAATGCCATTACCCATGGCAAATTCCATGAGGCTTCTATACTCGACATGGTAGGTCATCGCCTCTGGCAGTGACGTGGCTCTATGACGGGATACGCT
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| DNA Sequence for Gene |
>PseBG33_1477
ATGGAATGGCTGGGCCAGCATTTTTTCACCGACCTTCCAGACACCGGGCATTTATTGCTCAATTGCAGCCATAACCCCTTTCTGGTGCTACTGGCGTATC TGGTTGCCTGCGCAGCGGGGTTCGGCACGCTGGACATGGCCGAACGCGTCGGCCATGTAGAAGACCCCACCGCTCGCCGCCACTGGCGCTGGCTGGGAGC GGGCTGCCTGGCGGGCGGGATCTGGTCGACCCACTTCATCAGTATGCTGGCGTTCCAGGCCCCGATCGCCATTCATTACGAATTACTCACGACGTTTGCC TCGCTGTTGATCGCCCTGATCGCCTCGCTGTTCGCCATGAAAACCCTCAGTCATGCCCATCTGCGTGTGCACCAATACCTGCTGGCTTCGATATGGATGG GGCTGGGCATCGCGCTGATGCATTACGTGGGCATGGCGGCGATGCGCTCCCAGGCGCAGGTGTACTTTGAATCGCAGTTGTTCATGGCCTCGGTGGCGAT TGCCATCGTTGCCAGCCTTGCGGCGTTGCTGCTGTCCAGTTACCTGCGCAACGGTGCCGGGGTGTTTCACCAACTGCTCAAGTACGCCGCCAGCCTGGTT CTTGGCGCGGGGATCCTGAGCATGCACTTCACCGGCATGGCGGCCATGCAAATGCTGGTACCCAGCGGCGCGGACCTGTCGTTGCCGGTGGACAACAATC CGATTCAACTGGGCCTGTCGGTGGCGGTGATTACCCTCTTGGTGATCGGCAGCGGTGTCAGCGCAGCCCTGGCAGACAAAAAACTGCAGCACAAGGAGCG TGACCTGCGCCGCGTCAATGCGCTGCTCAGCGAACTCGACCAGGCCCGCGCCTCACTGCAACAAGTGGCCCATTTTGACGCGTTGACCAACTTGCTCAAC CGCCGTGGTTTCAATCAGATCTTCGCGGAGAAAGTTGCAGAAAAAACCCGAAGCCAAGGCATGATGGCGGTGATCTTCCTCGACATTGACCACTTCAAGC GCATCAATGACAGCCTCGGCCATGACGCTGGTGACCAGTTGCTCACGGTGCTGGCCGGGCATATCAAGGGCTCGATACGTAGCCGTGAGGATGTGGTCGC ACGGTTTGGCGGCGATGAGTTCTGCATCCTGATCAATATCCATCACCGCGACGAAGCGCGGCACATGGCCCAGCGCATCATGCAGAAAATGAAAGAACCC ATCGAACTGGCCGGCCGCCGCATGGTGATGACTACCAGCATCGGTATCAGCCTGTTCCCCGACGATGGCCAAACCTGCGAAGAACTGCTGAAGACCGCCG ACCTGGCGCTGTACCAATCCAAGGACACCGGGCGCAACAGCCTGAACTTCTTCAGCTCCAACCTGAAAACCCGTGCCTCCCTGGAACTGCAACTGGAAGA GGAGCTTCGTGCCGCATTGCGCGCACGCACCGAACTGGTGCTGTTCTATCAACCAATCTTCGACATGAAACTGGGCAAGGTCACGCGCCTTGAGGCACTG GTGCGCTGGCAACACCCCCAGCATGGGTTGCTGGCCCCGGACCGGTTTATCGGCATCGCCGAGAACAATGGGCTGATCGCCGAGTTGGACCACTGGGTAT TGCGCCAGGCCTGTCACGACCTGAGCCTGTTGTCTGACCGGGGCTACACCGAGTTGACCATGGCCGTGAACTGCTCGGCCCTGAACCTGGCGCGGGACGA GCTGGCCGATGAAATCGAAGACGCCCTGCGCTTTGCCGGCGTGGCGGCCAACCGCCTGGAACTGGAAGTCACCGAAAATGCGCTGATGGGCAATATCAGC AGCACCCTGGCGCTGTTGCGGCAAATCCGTGCCCTGGGGGTCTCCCTGGCGATCGATGATTTCGGCACCGGCTACTCATCCCTGGCCTATCTCAAGCGCC TGCCGCTTAACACCTTGAAGATTGATCGCTCGTTTATCCAGGACATCCCCAAATCCACCGCAGACAGCGAAATCGTCCAGGCGATTATCGGCATGGCCCA CACCCTGCACTTGCAGGTGGTGACCGAAGGCGTGGAAACACAGGCGCAGTTTGAGCTATTGCTCAAGCACGACTGTGACTTCATCCAGGGTTACCTGCTC AGCCCGGCGGTGCCGTTCAACGACATCATCGGTGTGATGCAAGGCATTGCGATGCGCAATCCGCTCTACCCCTTCAGCGTGGAAGGCAATAAAGAGGCCG CTGCCCCCAAAGAACCCGCCGCAGGCCGTATCGGCCCGCCGGCCATCGTCAGGCCAATTCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCCGAAGCTTTGGCCTTAGCCATCATTTGACGAAAAGCCCCCGACGAACGGCCGACTCACCAGAGTCCGACGAGGGGTCCTTTTAAAAAACAGGGTTAG AACCGAGCGTCCCGGCACATCGCGCCCAACGACCTCCAAAAATAGCGCTGCCTCCTAGACCTGCGACGTCTTGTCGCCCCATGAGCAGCGCCCGCTGGCC ATCCAGCCCCGACTGGAAGATGATTCATCTCGTATCTGTTTGACCCTCGCGGCATCAAGACCAAACAGTCGCGCCGTTATTCAGTAGAGAGAAACGTCCA ACTTTATAATGAACAGCTGAGGAGGCTGTACCCCGTGCCGATTGTGCTGAACCCCTCCGACCAAGTTTATCAATTTGTTCTCTCTCAGCGCTGAACCGAC GAGTCCGCTCCTGTTAGGGAAGCTGAAGTAATCTTGAGGTACGCTGAATCTCTCCACCTGTCCTGTGATGAAAGGCTCTGTCACGTCCACGGGATGCAGA
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| Amino Acid Sequence |
>diguanylate phosphodiesterase
MEWLGQHFFTDLPDTGHLLLNCSHNPFLVLLAYLVACAAGFGTLDMAERVGHVEDPTARRHWRWLGAGCLAGGIWSTHFISMLAFQAPIAIHYELLTTFA SLLIALIASLFAMKTLSHAHLRVHQYLLASIWMGLGIALMHYVGMAAMRSQAQVYFESQLFMASVAIAIVASLAALLLSSYLRNGAGVFHQLLKYAASLV LGAGILSMHFTGMAAMQMLVPSGADLSLPVDNNPIQLGLSVAVITLLVIGSGVSAALADKKLQHKERDLRRVNALLSELDQARASLQQVAHFDALTNLLN RRGFNQIFAEKVAEKTRSQGMMAVIFLDIDHFKRINDSLGHDAGDQLLTVLAGHIKGSIRSREDVVARFGGDEFCILINIHHRDEARHMAQRIMQKMKEP IELAGRRMVMTTSIGISLFPDDGQTCEELLKTADLALYQSKDTGRNSLNFFSSNLKTRASLELQLEEELRAALRARTELVLFYQPIFDMKLGKVTRLEAL VRWQHPQHGLLAPDRFIGIAENNGLIAELDHWVLRQACHDLSLLSDRGYTELTMAVNCSALNLARDELADEIEDALRFAGVAANRLELEVTENALMGNIS STLALLRQIRALGVSLAIDDFGTGYSSLAYLKRLPLNTLKIDRSFIQDIPKSTADSEIVQAIIGMAHTLHLQVVTEGVETQAQFELLLKHDCDFIQGYLL SPAVPFNDIIGVMQGIAMRNPLYPFSVEGNKEAAAPKEPAAGRIGPPAIVRPIR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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