Pseudomonas synxantha BG33R, PseBG33_1062 (fecR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGTGGAGTGATCGCGTTGCAGCCGTCCAACACCGTCGAAGTTTTGTATAACGACCATCACCACTGGCTCACCGGCTGGTTGCGACGCAAGCTCGGCTGCC CGGAAAATGCGGCCGACCTGGCCCAGGACACCTTTATTCGCGTGCTCAGCGCACGGGATACCCCGACACTGATCGAGCCCCGCGCCTTCCTCACCACCGT GGCCAAGCGCGTGCTGTGCAACTTCTATCGCCGCCAGGACCTGGAGCGCGCCTACCTCGATGCCTTGGCGCAAATGCCCGAGCAGGTGGCGCCATCGGAA GAAGACCGCGCAATCATTCTGCAAACCCTACTGGAGCTGGACCAACTGCTCGACGGCCTGCCCCGGCTGGTTAAACGCGCGTTCCTGCTGGCCCAGCTCG ACGGCCTGACCTACGCGCAAATCAGCGCAGAACTGGGCATTTCCATCGCCACGGTCAAACGCCACCTGACCAAAGCCGCCATGCGCTGCTACTTCGCCCT
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| DNA Sequence for Gene |
>PseBG33_1062
|fecR
ATGAACGTGTCCAGCCAAGTCGCCGAACAAGCCGTGCACTGGCTGCTGGAAATGCAGCAAGGCGCGCTCACCCCTCGCCAGCAAGCGGCCTGGCAACAAT GGCTGAACGCCCACAGCGAGCACCAGCGTGCGTGGGAGCAGATTCAACAGGTCAATCAGCGCTTGCGCGGGATGCCCTCGCCCCTGGCCCATGCAGCCTT GAATGCACCGCGCTCCAGCAGCCGACGCCAGGCGCTGAAGTTGCTGCTGATCCTGGGCGCTGGCTCGGCAGCGGCCTGGAGCCTGCGTCAGCAACATATT CTGCCGCCGCTGAGCGCCGACTATCGCAGCCCGGTTGGCCAGCGCCGTACGGTGCAATTGGCCGACGGCAGCCAGTTGCAGCTCAACACCGGCAGCGCGG TGGATGTGCATTTCGACGGTCGGCAGCGCCTGGTACGCCTGCTCGAAGGGGAAATCCTGCTCACCTCCCGTGCCGGTGATACGCCGTTGCGCGTGCTGAC CGGCCAGGGCCTGCTCAGCAGCCAGGCGGCGCGCCTGAATGTGCGCCAGTTCAACGACCTCACCCAATTGGCGGTGCTGGCCGGCCAGGTCGAGGTGATG CCCAACAACTACAGCGGCTTGCCGCTGAGCGTCGATGCCGCACGCCAGGTCAATTTCACCCGCAAGGGCTGGGACACCCCACGCGCCACCGACGCCAACT GCGGCGCCTGGGCCGACGGTATGTTGGTGGCTGCACACATGCGCCTTGAAGACTTCTTGAATGAACTGGGGCGCTATCGTCGCGGCCAGCTCAATTGTGA CCCGCAAGTGGCAAACCTTTTGCTGTCCGGCAGCTACCCGCTAGATAACAGCGAACGCATTCTGGACCTGCTGGAAATCAGCCTGCCGGTGAAAGTTCGG CGCTTCACCCGCTATTGGGTGACTGTGCAGGCCCGGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATTTATTTTGCATTTGTGTGAGCTGTTTTCCGCACCTGGCGTGACAGAGAAGGAAAGCCACCTTGATCCTTCCTTCTCAGGACCACCTTCATGCCCCAGC AACCGACGCTTCTTGCCCGCACCTTGCGCCAACTCCTACTGGGCGCCAGCCTCAGCCTGACCGTGCTGCCTGCGGTGATGGCCGCCGACGCCAAGGCGTA CCACATCGCGCCGACCACCCTGGAAGCGGCCCTGAACCAATTTGGTCGCCAAGCCGGTGTGCTGGTGTCGTTCGGTTCTGATGTGACGGCTGGTATGCAA AGCCACGGCCTGTCGGGCAATTACAGCGCGGCCGAGGGCCTGAGCAAACTGCTGGAGGGCACCGGCCTGCAAGCCCGGGCCGAGGGCGACAACGCCTTCA GCCTGCAACCGGTTGGCGCCCCCGCCACCCTCGAACTGCAAACCTCCAACGTGGTCGGCGACTGGCTCGGTGACGCGGCGCAAACCAACGTGTTCGAACA
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| Amino Acid Sequence |
>membrane protein
MNVSSQVAEQAVHWLLEMQQGALTPRQQAAWQQWLNAHSEHQRAWEQIQQVNQRLRGMPSPLAHAALNAPRSSSRRQALKLLLILGAGSAAAWSLRQQHI LPPLSADYRSPVGQRRTVQLADGSQLQLNTGSAVDVHFDGRQRLVRLLEGEILLTSRAGDTPLRVLTGQGLLSSQAARLNVRQFNDLTQLAVLAGQVEVM PNNYSGLPLSVDAARQVNFTRKGWDTPRATDANCGAWADGMLVAAHMRLEDFLNELGRYRRGQLNCDPQVANLLLSGSYPLDNSERILDLLEISLPVKVR RFTRYWVTVQARA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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