Pseudomonas synxantha BG33R, PseBG33_1059
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTCGGAGAAGCAAATCTCGATTTCAAGTTCAGGGTAACGCTCCATCAGGCCCCACAAGGCCGGTGCCGCATAGTGGTGCCCGAACGCCAGCGGCACACT GACCCTCAGTCGTCCCCGTGGTTGTTGCCGGCCACTTTCGAGCACCGATTCGGCCGCTTCCAGTTCGGCCAATGCGCGCAGGCAATGTTCGTAGTAGGCC TGCCCATCCTCGGTCAACCGCTGGCGGCGTGTGGAACGCTGCAACAGGCACGTGCCCAGCCGCGCCTCCAGACGCGCCAAGCCTTTACCGACGGCCGAGC GTGTAAGGTTCAGGCGCTCGGCGGCGTCGGTCAGGTTGCCGCTCTCGACGATTTGCAAAAACAGCTCAACGCCATCAAAACGCGGGGTAGCCATGCGTCA ATTGTCGCCCTTGATTCCCATATCGATGGAAAACTTATCACGAATAACGAATTCGATTCCCGAGAGAATAGAGCCCTCCCCTATTTGAAAGGAACTCGTC
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| DNA Sequence for Gene |
>PseBG33_1059
ATGCCGTCCGCCGCTGCTGCATCGGCCCTCAACCCGCCGAGCGCCGCCAGAAATGCCCTGGCCCTCACCGCCGTTTGCCTGGTGGCCCTCATGTTCGGCC TGGAAATCTCCAGCGTGCCGGTGATCCTGCCGACGCTGGAACAGGAATTGGGTACCGGCTTTCAAGACGCCCAATGGATCATGAATGCCTACACCCTGGC CTGCACCAGCGTGCTGATGGCGGCGGGCACGCTGGCGGATCGCTTCGGTAGGCGGCGCGTGCTGGTGCTGTGTCTATGGGTGTTCGCCCTGGCCTCGCTG GCGTGTGGCCTGGCCAACGATGCGCCGACACTGATCGTGGCGCGATTCATCCAGGGCATTGGCGCCGGCGCGATGATGATTTGCCAGTTTGCCATCTTGT CCCACCAGTTCCGCGAACCGGCGGCGCGGGCGCGAGCCTTCGCGATATGGGGCGTGATTGCCGGCGTGGGCCTGGGTTTCGGGCCGATGATCGGGGCAGT GATACTGGCCGTGGCGGACTGGCGCTGGGTTTTCCTGGTGCATGTACCACTGACCTTGTTTACCTTGGCGCTGCTGCACATCAGCGTGCAGGAATCCCGT GACCCGGCCAGCCATCGCCTCGACATTGCCGGCATGTTGACCATGACGCTGGCGGTGTTTGCGCTGGTCTACTTCATCACCCAAGGCAGCGAGAACGGTT TCGGCACCCCGGCGATGCTCGGCTGGGCCGGCCTGTCGGTCTTCGGACTGCTGCTGTTTATCTTGATTGAGCGGCGCAGCGCCCATCCGATGTTCGACTT CTCGGTGTTCCGCATCCAACGTTTCAACGGCGCCTTGATGGGCTCAATCGGCATGAACTTCAGCTTCTGGCCGTTCATGATCTACTTGCCACTGTATTTC CAGGCGGGCCTGGGTTACGACACGCTGACCACCGGCGCGGCGCTGCTCGCGTACACCTTGCCCACTTTGTTGGTGCCGCCATTGGCCGAACGCCTGGCCC TGCGCTTTGGCGCCGAATGCATCATCCCCCTGGGCCTGGGGACGATGGGCGCAGGTTTTTTGGGCATGGCCGCGGTTAATTACGCCGAACAGCCCAGCAC AGCACTGGTGCTGCTCAGTTGCGCGATCGCCGGCATTGGGCTGGCACTGACCAATTCGCCGACCACCAATACCACCACCGGCGCCGTCTCGACTGACCGC GCAGGCATGGCCTCGGGCATCGACTTCAGCGCACGGCTGATCACCCTGGCGCTCAACATCGCATTGATGGGGCTGGTGCTGTTGCTCGGAATCAGCCATC ACCTGGCCAATGTATTGCCGGCCAGCACGGCGGCGGATTGGGCAACCCTCAGCCAGCATATTGCGGCGGGCAAGCTGAACGCGCCTGGACTCACACGCCT GGAGGCACAGACGGCCCTGCGTAGCGGCGCTGGTTGGGCCATGCTGTTTGCGGGCTTGGGCGCTTGCGGGTTGGCCGCTCTGAGCCGGTATTTCTTCCAG CGACGGCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGAAAACGGGCCTGCATATGCAGGCCCGTTTTCAGTGGGGAATGAAAAAACAGTTAGCTGTTAATAACAGCGTTTTCGTTTTCCAGGAATTCCTCTTCC AGCGCGTCTTCATTCACTTTGTTGATCGGCTGGTTTTTCCCGGCAGCGCGAGGCTTGCCTTGCAGTTTGCCGAACAAGTGTTCCAGCGCATGATCCAGCT TGGTGGCGGCGCCATCGATCGCTTGCTCCAGCGTATCGGCTTTATGGCACACGGAAACTGGCTGGTGGCCCTTTGGCCGTGCTTCCAGGCGGCAACTTAA ATCGTGGGGTCCGGGCTTGTCGCCGTTCTCGTCCCGCAGGTAGACCTCAACGCGGGTCAGGTCTTCTTCATAACGTTCGAGCGTGCTCTCAATGGTAGTA CGTACCCACTCCTCCAGTCGGATGCTGCTTTCAATATGGTTATCGCTATTGACTTGGATTTGCATAGTTCTTCCCTTATTTCAGCTAGCTCGCCAGAGAT
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| Amino Acid Sequence |
>MFS transporter
MPSAAAASALNPPSAARNALALTAVCLVALMFGLEISSVPVILPTLEQELGTGFQDAQWIMNAYTLACTSVLMAAGTLADRFGRRRVLVLCLWVFALASL ACGLANDAPTLIVARFIQGIGAGAMMICQFAILSHQFREPAARARAFAIWGVIAGVGLGFGPMIGAVILAVADWRWVFLVHVPLTLFTLALLHISVQESR DPASHRLDIAGMLTMTLAVFALVYFITQGSENGFGTPAMLGWAGLSVFGLLLFILIERRSAHPMFDFSVFRIQRFNGALMGSIGMNFSFWPFMIYLPLYF QAGLGYDTLTTGAALLAYTLPTLLVPPLAERLALRFGAECIIPLGLGTMGAGFLGMAAVNYAEQPSTALVLLSCAIAGIGLALTNSPTTNTTTGAVSTDR AGMASGIDFSARLITLALNIALMGLVLLLGISHHLANVLPASTAADWATLSQHIAAGKLNAPGLTRLEAQTALRSGAGWAMLFAGLGACGLAALSRYFFQ RRR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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