Pseudomonas synxantha BG33R, PseBG33_0417 (phaA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCAGGGCCACGGCAAGCCCATCCTGCAATTCGGCAAGCTCAATGTCAGGTTGACCCAGGTCGAACCGGCCGGCCAGTACGCACTGAAATTGACCTTCGA TGACGGCCATGACAGCGGACTGTTCACTTGGGACTACCTCTACCAGTTGGCCGTACGTCAGGACGCGCTATGGGCCGACTACCTGGCCGAGCTCAAAGCG GCCGGAAAAACCCGCGACCCGAGTGAGTCGGTCGTGCGGCTGATGCTCTAGCACAGGCATCTTGGTCTTTAGAGCGCATTTTCTAATTTCATCTGCTTGA ATGCCCTGTCGCGTGGCCAATGATCGGCCCGCTTGCGAAAAAAAATAAACTCGGGTAACCAATGGAGCTGGCAAGTTCCCTGCATTTGACGATGCGGTAT CAACGGTCACCCGGGTCGCAGTACCAGGCTGGTGTCGTGTATCGAAATTGGGTGCGCAGCAATCGCCGGTACTCGTCTTTCGGACAATGGAGCGTCGTAG
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| DNA Sequence for Gene |
>PseBG33_0417
|phaA
ATGAGTAACAAGAATAACGATGACTTGAAACGCCAGGCCTCGGAAAACACCCTGGGGCTGAACCCGATCATCGCGTTACGCAAAAAGGATTTATTGGCCT CGGCCAAGATGGTGCTGACCCAAGCCATCAAGCAGCCGTTGCACAGCGTCAAGCACGTCGCCCACTTTGGCGTCGAGTTGAAGAATGTGATGTTCGGCAA ATCCCAACTGGTGCCTGAAGGCGATGACCGTCGCTTCAACGACCCGGCCTGGAGCCAGAACCCGCTCTACAAACGTTATTTGCAGACTTACCTGGCGTGG CGCAAGGAACTCCACGACTGGATCGACGACAGCAACCTGCCGGCACAAGACATCAGCCGTGGCCACTTCGTGATCAACCTGATGACCGAAGCCATGGCCC CCACCAACAGTGCGGCCAACCCGGCGGCGGTCAAGCGCTTCTTTGAAACCGGCGGCAAAAGCCTGCTCGACGGTTTGTCCCACCTGGCCAAGGACATGGT GCACAACGGCGGTATGCCGAGCCAGGTCAACATGGGCGCTTTTGAGGTCGGCAAGACCCTGGGCACCAGCGAAGGCGCGGTGGTGTTTCGCAACGATGTG CTGGAGCTGATCCAGTACAAGCCCATCACCGAGCAGGTACACGAGCGCCCACTGCTGGTGGTGCCGCCGCAGATCAACAAATTCTACGTATTCGACCTGT GCCCGGAAAAAAGCCTGGCGCGTTTCTGCCTGCGCAATGGGCAACAGACCTTTATCGTCAGTTGGCGCAACCCCACCAAGGCCCAGCGCGAGTGGGGGCT CTCTACTTATATCGAGGCGCTCAAGGAAGCGGTCGATGTGGTCACGGCAATTACCGGCAGCAAGGACGTGAATATGCTCGGTGCCTGCTCCGGTGGCATC ACCTGCACCGCACTGCTGGGCCACTACGCGGCGCTGGGCGAGAAGAAGGTCAACGCCCTGACCCTGTTGGTGAGCGTGCTGGACACCACCCTGGACACCC AAGTGGCGCTGTTTGTCGACGAGCAAACCCTGGAAGCAGCCAAGCGCCATTCCTATCAGGCCGGCGTGCTGGAAGGCCGCGACATGGCCAAGGTGTTTGC ATGGATGCGTCCCAACGACCTGATCTGGAACTACTGGGTCAATAACTACCTGCTGGGCAACGAACCGCCGGTGTTCGACATCCTGTTCTGGAACAACGAC ACCACCCGCTTGCCGGCCGCTTTCCATGGCGACCTGATCGAACTGTTCAAGAACAACCCACTGGTACGCGCCAACGCCCTGGAAGTGTGCGGCACGCCCA TTGACCTCAAGCAGGTCACTGCCGACATCTACTCCCTGGCCGGCACCAACGACCACATCACGCCGTGGCAGTCGTGCTACAAGTCGGCGCAGTTGTTCGG CGGCAAGGTCGAGTTCGTGCTCTCCAGCAGTGGGCACATCCAGAGCATCCTCAACCCGCCGGGCAACCCCAAGGCGCGCTACCAGACCAGCGAGGGCTTG TCGGGCAGTGCGTTGCAGTGGCAGGAGAACGCCACCAAGCACACCGATTCGTGGTGGCTGCACTGGCAGGTGTGGCAGGCGGAGCGGGCGGGGAAGTTGA AGAAAGCACCGGCGACATTAGGCAGTAAAACCTATGCCGCCGCCGAAGCGGCGCCAGGTACCTATGTACATGAACGCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCATTCTTGTGATTGAAATGAGATCAGATGTGGGAGCTGGCTTGCCTGCGATAGCGATGGGCCTGCTCACTAATCGCTGCCTGAAAGAATGCCATCGCAG GCAAGCCAGCTCCCACACTGACCGGGTTCCTACAGACCAATAGCACCACTTCACAGGGCTTGAGCATGGCGCAACCGTTCATCTTCCGTACCATCGACCT GGATGGCCAGACCATCCGCACGGCGGTACGCCCGGGCAAGCCGCACTTGACCCCGCTGCTGATCTTCAACGGCATCGGCGCCAACCTTGAGCTGGTGTTC CCGTTCGTCCAGGCCCTGGACCCGGACCTGGAAGTGATTGCGTTCGATGTGCCCGGTGTCGGTGGCTCATCGACGCCGAAGCGGCCCTATCGCTTCCCCG GCCTGGCCAGGCTCACCGCGCGTATGCTCGATTACCTCGACTACGGCCAGGTGAACGCCGTGGGTGTGTCCTGGGGCGGGGCACTGGCGCAGCAGTTCGC
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MSNKNNDDLKRQASENTLGLNPIIALRKKDLLASAKMVLTQAIKQPLHSVKHVAHFGVELKNVMFGKSQLVPEGDDRRFNDPAWSQNPLYKRYLQTYLAW RKELHDWIDDSNLPAQDISRGHFVINLMTEAMAPTNSAANPAAVKRFFETGGKSLLDGLSHLAKDMVHNGGMPSQVNMGAFEVGKTLGTSEGAVVFRNDV LELIQYKPITEQVHERPLLVVPPQINKFYVFDLCPEKSLARFCLRNGQQTFIVSWRNPTKAQREWGLSTYIEALKEAVDVVTAITGSKDVNMLGACSGGI TCTALLGHYAALGEKKVNALTLLVSVLDTTLDTQVALFVDEQTLEAAKRHSYQAGVLEGRDMAKVFAWMRPNDLIWNYWVNNYLLGNEPPVFDILFWNND TTRLPAAFHGDLIELFKNNPLVRANALEVCGTPIDLKQVTADIYSLAGTNDHITPWQSCYKSAQLFGGKVEFVLSSSGHIQSILNPPGNPKARYQTSEGL SGSALQWQENATKHTDSWWLHWQVWQAERAGKLKKAPATLGSKTYAAAEAAPGTYVHER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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