Pseudomonas synxantha BG33R, PseBG33_0415 (phaC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCCCCGGCGTTATATCCAACCCTCCCATGTGGTGCGCATCGCGCCGATGATTTATGGCGGCTCGTTCCGCCGCGATTCGAACCTGGCCGCCGAACATGC CAGCAAAGTACGCTCGGCTGGCAAGCTGGGTTACTACTGGCAATTGTTCGCCGGGCTGGGCTGGACCAGCATTCATTGGCTGCACAAGATTCGCCAGCCC ACCCTGGTGCTGGCCGGGGACGATGACCCGCTGATCCCGCTGGTCAACATGCGCATGCTCGCCTGGCGCATCCCCAATGCGCAGTTGCACATCATCGATG ACGGCCACCTGTTCCTGATCACCCGGGCTGAAGCGGTGGCGCCGATCATCATGAAGTTTCTCGAAGAGGAGCGCTTGCGTGCAGTGATACATCCGCGACC GGCGGTGTGAAGGACCACACCACCGCGCAAGTTGCCAGGAACCGACTATGGTTCTGGATTGGCGTGCCTGCTTGATGTCTTGACGAAGGAGTGTTGGCTC
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| DNA Sequence for Gene |
>PseBG33_0415
|phaC
ATGCGAGAAAGACCCGTGACGAACCCGGCGCCCACCCCCGCAGCGTTCATCAACGCACAAAATGCGATCACCGGCCTGCGCGGCCGCGACCTGCTGTCAA CCCTGCGCACCGTCGCCGCGCACGGGCTGCGCAACCCGGTGCACACCGCCCGCCACGCCCTGGCCCTGGGCGGCCAACTGGGCCGTGTGCTGCTGGGTGA GACCGTGCACGAGCCCAACCCAAGGGACAATCGCTTCAGCGACCCCACCTGGACGCTCAACCCGCTGTACCGGCGCAGCTTGCAAGCCTATCTGAGCTGG CAGAAACAGACGCGGCAGTGGATCGATGACAGCACCCTCAGTGACGATGATCGCGCGCGCGCGCAGTTCGCCTTCGCCCTGCTCAACGACGCCGTCTCCC CTTCCAACACCCTGCTCAACCCGCTGGCGATCAAGGAGTTGCTCAACTCCGGCGGCAACAGCGTGGTGCGCGGCGTGAGTAACCTGTTCGAAGACCTGCT GCACAACAACGGTTTGCCCCGCCAGGTCAGCAAACACGCCTTCGAAGTCGGCAAGACGGTGGCGACCACGCCCGGTTCGGTAGTGTTTCGCAACGAACTG CTGGAGCTGATCCAGTACAAGCCCATGAGCGAAAAACAGTACGCCAAGCCGCTGCTGGTGGTGCCGCCGCAAATCAACAAGTACTACATCTTCGACCTCA GCCCGGCCAACAGCTTTGTGCAATATGCCCTTAAAAATGGCCTGCAAACCTTCATGATCAGTTGGCGCAACCCGGACGTGCGCCATCGCGAATGGGGCCT GTCCACCTACGTGGCGGCGATGGAGCAGGCAGTGAATGTCTGCCGGGCCATCACCGGCGCCCGCGAGGTCAACCTGATGGGCGCCTGCGCCGGTGGCCTG ACCATCGCCGCCCTGCAAGGCCACCTGCAAGCCAAGCGTCAGCTGCGGCGCATCTCCAGCGCCAGTTACCTGGTGAGCCTGCTCGACAGCCAGATCGACA GCCCCGCAACCTTGTTCGCTGACGAACAAACCCTGGAAGCCGCCAAGCGCCGCTCCTACCAGCAGGGCGTGCTGGACGGCCGTGACATGGCCAAGGTGTT TGCCTGGATGCGCCCCAACGACCTGATCTGGAACTACTGGATCAACAATTACCTGCTGGGCAAGGAGCCGCCGGCCTTCGACATCCTGTACTGGAACAAC GACAACACGCGCCTGCCCGCCGCCTTGCACGGCGACCTGCTGGACTTCTTCAAGCACAACCCCCTGAGCCATCCTGGCGGCCTGGAGGTGTGCGGCACGC CCATCGACTTGCGCAAGGTCACGGTGGACAGCTTCAGCGTGGCCGGGATCAACGACCACATCACACCGTGGGACGCGGTGTATCGCTCCACCCAACTGCT GGGCGGCGAGCGGCGCTTTGTGCTGTCCAACAGCGGGCATATCCAGAGCATCCTCAATCCGCCGGGCAACCCCAAGGCCAACTACGTCGAGAACCTCAAG CTGAGCAGTGACCCGCGTGCCTGGTACTACGACGCCCGGCATGTCGAAGGCAGCTGGTGGCCGCAGTGGCTGGAATGGATACAACAACGCTCCGGGGTAC AACGCGAAACGCTTACCGCCCTGGGCAACCAGAACTACCCACCGATGGAAGCAGCGCCAGGCACTTATGTGCGGGTGCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTCAACGATCACATTAAGAAGACTGGATGAAGACCCGCGACCGTATCCTTGAATGTGCCTTGCAGTTGTTCAACCACAAGGGCGAACCGAACGTCTCGA CCATGGAGGTGGCCAATGAAATGGGGATCAGCCCCGGCAACCTCTACTACCACTTCCACGGCAAGGAGCCGTTGGTGCTGGGGCTGTTCGAGCGCTTTCA ATGCGAGTTGGCACCATTGCTCGATCCTCCCGCCAATGCGCAACTGGAGGCCGAGGATTACTGGCTGTTCCTGCACCTGATTGTCGAGCGCATGGCCCAC TACCGCTTCCTGTTCCAGGACCTGTCGAACCTGGCCGGGCGCCTGCCGAAGCTGGCCAAGGGCATTCGCAACCTGCTCACGGCGCTCAAGCGCACCCTGG CCTCATTGTTAGCGCGGTTGAAAGCCGCGGGGCAACTGGTCAGTGACACCCAGGCACTGGGACAGCTGGTGGAACAGATCACCCTGACCCTGCTGTTTTC
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MRERPVTNPAPTPAAFINAQNAITGLRGRDLLSTLRTVAAHGLRNPVHTARHALALGGQLGRVLLGETVHEPNPRDNRFSDPTWTLNPLYRRSLQAYLSW QKQTRQWIDDSTLSDDDRARAQFAFALLNDAVSPSNTLLNPLAIKELLNSGGNSVVRGVSNLFEDLLHNNGLPRQVSKHAFEVGKTVATTPGSVVFRNEL LELIQYKPMSEKQYAKPLLVVPPQINKYYIFDLSPANSFVQYALKNGLQTFMISWRNPDVRHREWGLSTYVAAMEQAVNVCRAITGAREVNLMGACAGGL TIAALQGHLQAKRQLRRISSASYLVSLLDSQIDSPATLFADEQTLEAAKRRSYQQGVLDGRDMAKVFAWMRPNDLIWNYWINNYLLGKEPPAFDILYWNN DNTRLPAALHGDLLDFFKHNPLSHPGGLEVCGTPIDLRKVTVDSFSVAGINDHITPWDAVYRSTQLLGGERRFVLSNSGHIQSILNPPGNPKANYVENLK LSSDPRAWYYDARHVEGSWWPQWLEWIQQRSGVQRETLTALGNQNYPPMEAAPGTYVRVR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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