Pseudomonas synxantha BG33R, PseBG33_0035 (rsmB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGCTGCTCAAGGTCACCACCCCGATCACCGCGCAAGACACCGGCGGCAGCCTGCACGACCGCCTTGCCGAAATGGGCCCACCTGCCGTGATCCAGGCCA TCGCCGGCCTCGCAGCAGGCACCCTGGAAGGCGAGGTACAGGACGACAGCCTGGCCACCTACGCGCACAAATTGAACAAAGACGAAGCGCGCATCGACTG GAGCCGCCCGGCCGTGGAGCTGGAGCGCCTGGTACGTGCCTTCAACCCATGGCCAATCTGCCATAGCACCCTGAACGGCGAAGCCTTGAAGGTGTTGGCC GCGACCCTGGCCAATGGCAAAGGCGCCCCCGGCGAGATTATCGGCGCCAGCAAAGACGGGCTGTTGGTCGCTTGCGGTGAACAGGCGCTGTGCCTGACAC GTCTGCAATTGCCCGGCGGCAAAGCGCTGAACTTCAGCGATTTGTTCAATAGCCGCCGTGAGAAATTTGCCTTGGGCACGATCCTCGGGGTGGCCGCTCA
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| DNA Sequence for Gene |
>PseBG33_0035
|rsmB
ATGAACCCACGTCTGGCCGCCGCCAAGGCTCTCGCTGCCGTGCTCAACGGCAAGGCTTCGCTGAACAGTTCATTGCCCACGCAATTGGACAAGGTCGAAG ACCGGGATCGCGGTTTCACCCAGGACCTGGCATTTGGCACCGCCCGCTGGCAGCCAAGGTTGTCGGCACTGGCAGCCAAGCTGCTGCAAAAACCGTTCAA GGCGGCAGACGCTGATGTCGAGGCGCTGTTGCTGGTGGGCCTCTATCAATTGCTCTACACCCGCGTACCGGCCCACGCCGCCATCGGTGAAACCGTCGGT TGCGCCGACAAGCTGAAAAAGCCTTGGGCCAAGGCCCTGCTCAATGCCGTACTGCGCCGGGCCCAGCGTGAAAGCGAAGCGCTGCTGGCCGAGTTGGAAC ATGATCCGGTGGTGCGCACCGCCCACCCGCGCTGGCTGCAAAAATCCCTGAAAGCGTTCTGGCCCGAGCAATGGGAAGCTATCTGCGCGGCCAACAATGC GCACCCGCCGATGATCCTGCGGGTCAACCGTCGCCACCATAGCCGTGATGCGTATCTGCAATTACTGGCCGACGCGGCCATCAACGCCACCCCGTGCGTG TACAGCACCGACGGCATCGTGCTGGAAGCCGCCACCGATGTGCGCAGCCTGCCGGGCTTTGCCGAAGGCTGGATCAGCGTGCAGGACGAGGCCGCGCAAT TGGCGGCCGACCTGCTCGATTTGGCCCCCGGCCAGCGCGTACTCGACGCCTGCTGCGCGCCAGGTGGTAAGACCTGTCACATCCTTGAAGTTGAAAAAGA CCTGGCCGGTGTAGTGGCTGTGGATCTTGAAGCCAAACGCCTGGTGCGCGTGCGGGAAAACCTTGCACGCCTGGGCCTCAGCGCCGACCTGATCGCCGCC GACGGCCGCAACACCGCGACCTGGTGGGACGGCAAGCCATTCCAGCGCATCCTGCTGGACGCACCTTGCTCTGCCACCGGCGTAATCCGTCGGCACCCGG ACATCAAGCTGACCCGCCAGCCCGACGACATCGCCGCCCTCGCGGTGCTGCAAGGCGAATTGCTTGACGCCCTGTGGCCAACCCTGGAAGTCGGCGGCAT CCTGCTGTACGCCACCTGCTCCACGCTACCCACCGAAAATACTGAGGTCATCCAAGCCTTCCTCGCCCGCACCAGCGGCGCGCGCGAACTGGACCTCGCT ACCAGCGCCGGCATCAAGCAGCCCCACGGCCGCCAACTGCTCGCGCAGGAAGGCGGGCACGATGGCTTCTACTACGCCAAACTGATCAAGATCGCCGCCG CGCGCGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGGTTTTAAGGGAGTGACCGGATGAAAATCATCATCCTTGGGGCAGGGCAGGTTGGTGGCACACTGGCCGAACATCTGGCCGGCGAAGCCAACGACATT ACCGTGGTCGACACTGATGCCGAGCGCCTGCGTAACCTGGGCGACCGCCTGGATATCCGTACGGTGCAAGGCCGCGCATCGTTTCCGACGGTGCTGCGTC AGGCGGGTGCCGACGATGCCGACATGCTGGTCGCGGTGACCAACAGCGACGAAACCAACATGGTCGCCTGCCAGGTGGCCCATACCTTGTTCCATACCCC GACCAAGATCGCCCGTGTGCGCGAGGCGGCCTACCTGACCCGCGCCGGCTTGTTCGATAACGATGCCATTCCCGTCGACGTACTGATCAGCCCGGAACAG GTAGTGACCCACTACATCAAGCGCCTGATCGAGATTCCGGGCGCCTTGCAGGTGATCGACTTCGCCGAAGGCAAGGCGCAATTGGTGGCGGTGAAGGCTT
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| Amino Acid Sequence |
>16S rRNA methyltransferase
MNPRLAAAKALAAVLNGKASLNSSLPTQLDKVEDRDRGFTQDLAFGTARWQPRLSALAAKLLQKPFKAADADVEALLLVGLYQLLYTRVPAHAAIGETVG CADKLKKPWAKALLNAVLRRAQRESEALLAELEHDPVVRTAHPRWLQKSLKAFWPEQWEAICAANNAHPPMILRVNRRHHSRDAYLQLLADAAINATPCV YSTDGIVLEAATDVRSLPGFAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLAGVVAVDLEAKRLVRVRENLARLGLSADLIAA DGRNTATWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQPDDIAALAVLQGELLDALWPTLEVGGILLYATCSTLPTENTEVIQAFLARTSGARELDLA TSAGIKQPHGRQLLAQEGGHDGFYYAKLIKIAAARG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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