Pseudomonas umsongensis 20MFCvi1.1, D470_RS0126095
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis 20MFCvi1.1 D470DRAFT_scaffold00013.13, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGTGCACCAACCGGCATCTGGCCCAGAGCCTGCCGGCCGGCACGCCCCTGGGTTTCGAACGACCGGGGCCGGTGGCCTGGGCCCGTTTGCGTAACCCGC CGAGCCCGCAGAGTTTGCCGCGACTGGATGGCGAATCCCGTTGGCGGCTGGTGTCGCAACTGACCCTCAATCATTTGTCACTGGTCGAGGGGCCGCAAGC GCTGGATGCCCTCAAGGAAATCCTCCAGTTGCACAACCTGCGTGACGAGGCCAGCGCCTTGCGGCAAATCGACGGCTTGTTAAGCCTCGGCTGCGAACGG GTGATCGCCCATGTTGGTGAAGACGCGTGGCGCGGCTGGCGCAATGGGCTGGAGGTCCGGCTGCAACTCGATCCGCAGCATTTCGTCGGCAGCAGCGCGG TGTTGTTTTCCGCAGTGCTGGCGCAGTTCTTTTCACTCTATGCCACGGCCAATCGCTTCGTGCGCACGGTTCTGGTCCAGTCAGACAAGGAGGTCAAGAC
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| DNA Sequence for Gene |
>D470_RS0126095
ATGGCAACCCCAAGCCGGCATGCCGCTGTCCCTCTGAGTCTGAGTCAGAAGCTGCGGCGCGATCCGCAGGCGTTCGAGTTGTTGCAGGCGTTGTTGCTGC TGGAACGCGAACACCCGCAAGCCGAATCCCTGGGCAGCGGCACCGCCCCTCAAGCGGAAGCCTTGCGCCTGCGCGGGCCGTTGACGCCGCTGTTTTCCGC CAGCGAAATCGAAAGTCTGACCCTGGACGCGGGCCAGCCACCGACGCTCACGACACCAGTGTTTGGCCTCGGCGGGCCGGACGGCCCCCTGCCCTACGCC TATCAGGAATGGCTGCAACAACGGGCCCGGGCCAAGGACTATGCCCCGGCCGAATTCCTCGACCTGTTCCAGCATCGCTTGCTCAGCCTGCTGTACAAGG TGATGCGCAAACACCGGATCGCCGTCGGCTTCACAGCCCCCGGCGCATCGCCGGTGCAGGCGCAACTGCGGGCGCTGACCGGGCTGTTGCCCAAAGCCTT GCAGGAACGCCAGGCCGTACCCGACTCTGCGGTACTGGCGTGCAGCGCGCTATTTGCCGACGGTCGTCGTTCCCTGGCCGGTTTCGCCGCGATCGTGCGC GAGCACTTCGAACTGCCGGTAGAACTCAGCGCCTATGAAGGTGCCTGGCGGGAGATTCCGCCGGCCAGTCGCAGTCGCCTGCAACCGGGCGGGCGCAACC TGCAACTGGGTCGTAACGCGGTGGCCGGCACTCGGGTCTGGGATGAACACGCCGGCATCCGCCTGACCCTTGGCCCACTGACCTCGGCGCAGGCGGCGCG GTTTCTGCCGGACGGTGAAGCCCATCCGGCACTGGCCAGTCTCAGCGCGCTGTATTTCGGCCCCGACCTGGATTGCACACTGGTGCTGTTGGTGCGCGGT GCCAGTCCGATGAAACTCGGTCGTCAGGCACCGCCCTTTCTCAGTTGGAACGGCGGCCTGCAACGCCAGACCAGCCTTGCCGTGCAACGGATCGAAACCC GCCTTCGTCAGCTGGAGATCACCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACATGGAACTGGCCAGTCTGATCGGACGCCTCAACCCGGACAACCGCCGCGCCCTCGAACGGGCCGCGCAGCGCTGCCTGCAACGGGGTCATCATTACGT CGAAATCGAACACTTGCTGCTGGAGTTGCTGGACATCGAGGGCGGCGACTTCGCCTGGCTGCTGCCGCGTTTCGGACTGGAGCGCGATGCCCTGACGGCG GAAATCAACAAGGCCCTGGAACTGTTCAAATCCGGCAGCACCCGCACCCCGGCGCTCTCGGCGCACACCATCGGCCTGCTTGAAGACGCGGTGGTTCAGG CCAGTGTGCTTGGCCTGGAGAGCATCCGCTCCGGTTTGCTGCTACTGGCCCTGCTCGACCGTGATGAACGTCGCAGCCTGCTGCTCAATAGCGCCTCGTC GCTGTTGAAAATTCCACGGGAAGCCTTGCGCAGTAATTTGCTGGAGTGGACCGAAAACTCGCGCGAACACGTTGGCGGCACGCGGCCGGTCAGTGCCGGC
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| Amino Acid Sequence |
>type VI secretion protein
MATPSRHAAVPLSLSQKLRRDPQAFELLQALLLLEREHPQAESLGSGTAPQAEALRLRGPLTPLFSASEIESLTLDAGQPPTLTTPVFGLGGPDGPLPYA YQEWLQQRARAKDYAPAEFLDLFQHRLLSLLYKVMRKHRIAVGFTAPGASPVQAQLRALTGLLPKALQERQAVPDSAVLACSALFADGRRSLAGFAAIVR EHFELPVELSAYEGAWREIPPASRSRLQPGGRNLQLGRNAVAGTRVWDEHAGIRLTLGPLTSAQAARFLPDGEAHPALASLSALYFGPDLDCTLVLLVRG ASPMKLGRQAPPFLSWNGGLQRQTSLAVQRIETRLRQLEIT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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