Pseudomonas umsongensis 20MFCvi1.1, D470_RS0125085
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis 20MFCvi1.1 D470DRAFT_scaffold00012.12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCTGAAACAGTTTCCTGATAAAAGGATTGCCTCATGGCTCTCGACGTTCAAGAAAAAGCTCAAATCGTAGCTGACTACCAGCAAGCTGTTGGTGACACTG GTTCGCCAGAGGTGCAAGTTGCACTGCTGACCGCCAACATCAACAAACTGCAAGGTCACTTCAAGGCCAACGGTAAAGATCACCACTCCCGTCGTGGTCT GATCCGCATGGTTAACCAGCGTCGTAAGCTGCTGGACTACCTGAAAGGCAAGGACGTGAGCCGTTACAGCGCTCTGATCGCTCGCCTGGGTCTGCGTCGC TAATAAGCGATTGCGCTAGAGGTTGGTTGTTTGCTGTGTGCCAGCGGGTTTCCCGCAGGTACATGGCAGGCTCCCAGCCTCAAGTTTTATCTGGACAATA GTTTTACCCTGGACAATGACAGTCGGGCCGATTCCCGGCGTTGCCCAAGAATTTCGCAAGAAACCAGTTCCCCCAAGAGCCACAAAGAAGGTAGGACACC
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| DNA Sequence for Gene |
>D470_RS0125085
GTGAACCCGGTAATCAAAAAATTCCAGTTCGGTCAGTCGACCGTTACCCTCGAGACTGGCCGTATCGCCCGTCAGGCCTCCGGCGCAGTATTGGTCACCG TTGACGACGACGTCAGCGTATTGGTGACCGTAGTCGGTGCCAAACAAGCTGATCCAGGCAAGGGCTTCTTCCCTCTGTCTGTTCACTACCAGGAAAAGAC TTACGCCGCCGGCAAGATCCCTGGCGGTTTCTTCAAGCGTGAAGGCCGTCCTTCCGAGAAAGAAACCCTGACTTCCCGACTGATCGACCGTCCGATCCGT CCGCTGTTCCCTGAAGGTTTCATGAACGAAGTGCAGGTTGTCTGCACCGTCGTTTCCACCAGCAAGAAGACCGATCCGGACATCGCAGCGATGATCGGTA CCTCGGCTGCGCTGGCTATCTCCGGCATTCCTTTCGATGGCCCGATCGGCGCTGCCCGCGTTGCATTCCACGAAAGCACCGGTTACCTGCTGAACCCGAC TTACGAACAACTGAAAGCTTCGAGCCTGGACATGGTCGTTGCCGGTACTTCGGAAGCCGTGTTGATGGTTGAATCGGAAGCCAAAGAGCTGACCGAAGAC CAGATGCTGGGCGCGGTACTGTTTGCTCACGACGAGTTCCAGGTGGTGATCAACGCCGTTAAAGAGCTGGCCGCTGAAGCTGCCAAGCCGACCTGGGCCT GGGCTCCTCAGCCAGAAGCCACTGCTCTGCTGGGTGCTATCCGTGCCGAGTTCGGCGAAGCGATCTCCCAGGCTTACACCATCACCATCAAGGCCGACCG TTACGCTCGCCTGGGCGAACTGAAAGACCAAGTGGTTGCCAAGCTGTCCGGTGAAGAAGGCCAGCCTTCCGCTGCTGACGTCAAAGCTGCTTTCGGCGAA ATCGAATACCGCACCGTTCGCGAAAACATCGTTAACGGCAAGCCACGTATCGACGGCCGCGACACCCGCACCGTACGTCCGCTGAACATCGAAGTGGGTG TTCTGCCGAAGACCCACGGTTCGGCACTGTTCACCCGTGGCGAAACCCAGGCTCTGGTCGTCGCGACACTGGGCACCGCCCGTGACGCACAGCTGCTGGA CACCCTGGAAGGCGAGAAAAAAGACCCGTTCATGCTGCACTACAACTTCCCTCCGTTCTCGGTGGGCGAGTGTGGTCGCATGGGTGGCGCTGGTCGTCGT GAAATCGGTCACGGCCGTCTGGCTCGTCGTTCGGTTCAGGCCATGCTGCCTGCTGCCGACGTGTTCCCGTACACCATCCGTGTCGTGTCGGAAATCACCG AGTCCAACGGTTCGAGCTCCATGGCTTCGGTCTGCGGCGCTTCCCTGGCGCTGATGGACGCCGGTGTACCGATGAAGGCACCGGTTGCCGGTATCGCCAT GGGTCTGGTTAAAGAAGGCGAGAAATTCGCCGTCCTGACTGACATCCTGGGTGACGAAGACCACCTGGGCGACATGGACTTCAAAGTAGCCGGTACCGCC AAAGGTGTTACCGCGCTGCAGATGGACATCAAGATCAAGGGCATCACCGAAGAAATCATGGAAATCGCTCTGGGCCAAGCCCTGGAAGCGCGCCTGAACA TCCTCGGTCAGATGAACCAGATCATTGGCCAGTCGCGTACCGAACTGTCGGAAAACGCTCCGACCATGATCGCGATGAAAATCGACACCGACAAAATCCG TGATGTCATCGGTAAAGGCGGCGCGACCATTCGTGCGATCTGTGAAGAGACCAAGGCTTCGATCGACATCGAAGACGACGGCTCGATCAAGATCTTCGGC GAAACCAAGGAAGCGGCTGAAGCTGCACGCCAGCGCGTTCTGGGCATCACCGCTGAAGCTGAAATCGGCAAGATCTACGTCGGTAAGGTTGAGCGCATCG TCGACTTCGGCGCATTCGTCAACATCCTGCCGGGCAAGGACGGTCTGGTTCACATCTCGATGCTGAGCGACGCTCGCGTTGAGAAAGTGACCGACATCCT GAAAGAAGGCCAGGAAGTGGAAGTTCTGGTACTGGACGTGGACAACCGCGGCCGTATCAAGCTGTCCATCAAAGACGTAGCAGCGGCCAAGGCTTCGGGC GTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTACCCCCGCGCCTGACCGTTGAACAGCAAAACGCCCCGACTGGTTCGGGGCGTTTTGCTGTGTGCAGGAAAAAGCTGAGCGTGGAATTTGGTGTGGCGA GGGAGCTTGCTCCCTCGCCACAAGTTGCCGGACCTCGAGACCGGTGCTAGGTTTAGCCCACAGCCCGTGTAGCTCAGCCGGTAGAGCAGCGCACTCGTAA CGCGAAGGTCGCAGGTTCGATTCCTGTCTCGGGCACCATTTTCCCCGCTTACTTCACCTTTCTGCTCAGCTCCTCGACGGTGCGCTTGAGCTGATCCATC GCGCGATCCTGATCGCTGATTTCCCGTTTAAGACTGGAGATCTCGCTGTTGTTCGAGCTGGAGCTGGAACCGCTGTTGCGCTTGAGCTCTTCCACTTGTT TGGTGAGAGTGTTCAGGTCGCGTTCCTGTTCATTGACCGTGCGCTTGAGATCATCAATCTCCTTGCTGCTGGAGCTGGTGCTGGAACCACTGTTGCGTTT
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| Amino Acid Sequence |
>polynucleotide phosphorylase/polyadenylase
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLSVHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIR PLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVVAGTSEAVLMVESEAKELTED QMLGAVLFAHDEFQVVINAVKELAAEAAKPTWAWAPQPEATALLGAIRAEFGEAISQAYTITIKADRYARLGELKDQVVAKLSGEEGQPSAADVKAAFGE IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRR EIGHGRLARRSVQAMLPAADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLGDMDFKVAGTA KGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASG V
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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