Pseudomonas umsongensis 20MFCvi1.1, D470_RS0113795
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis 20MFCvi1.1 D470DRAFT_scaffold00005.5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGCGTTCCAGGCGCAAAAAGTCAGCGTCGTATTCCAGATCTTCGCCACAAGGCGAAGTCGCGGAAACGGCGGCGAGCAGCAAAGGCACTTCCACTGAA ATTGATCTCCCTATCGCCCGCGACAGAAACGGGCAGTTCACACGTTAGTTCCAAGTGGAACTTCGCATGTTTCCTTGTGTGTAATGGCCCTTTGGATCCT CTGTGATCTTAAAGTGCCATCACTGTATTCAAGAAAGTTGTTCATTTTTGGTGTAGTACTTATGGCTTGTCAAGGTAAGCTATTTCTCCTGTGTGACAGA TGTGAGGTGCTTAACAACCCTCGCGACCGGTAGGTCCAAGAAGGTACTGACGCAGATTTTTTGTCACGTAAACCGGTTAAGATCAGCAAATGTGCTGGTA AAAAGCTGTTTTTTAGGTTGTTTGCAAGGTTTGTCGGCGAGCTTCGCGGGGATTGATCCCTTCATTCGCCGGCGCGCAAAGTGTGCAGCAAGGAGGCAAG
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| DNA Sequence for Gene |
>D470_RS0113795
ATGCCGCTGTGTTTGACTATCACTAGTTATCACAAGATTACCCCTGGTCAATGCTCTGAAAAATCCATGGATCAGGGAGTAATGGCAATTGGCCGTAATT CTGATAATGACTGGGTATTGCCCGATCCAGAGCGCTTGGTTTCCGGAAAGCATTGCGTTATTCAATATAAAGATGGCCGGTATTATTTAACCGATAACAG CACTAATGGTGTGGAATTGGTTAAGGCCGGCATTCGTCTACGCAAAGGAAACAGCGAGCCATTGCAAGATGGGGAAGTTATCCGCATAGGTGATTATGAA ATCCAGGCGCGCATCGATTTCAATCTGCCGGTGACTGACAACAACCCTTTTGCCGATTCGTCCAACAGCTTCGAGGCTCTGATGGGGCGTCAGGGCGCCG GCGTGGCTGCGCCGACATCGTCGCCCATGACACCACCTGCACATTTCCAGGGTGTGTCGGCCATGGACACGCTGCCGGACTTGTTCGACTTTCTGGCACC GACCACCGTCCCGCCGGCCACCCAGTCCGACCATGTCCCGGCTGAGCAGCACGACTTCCGCCCACCGACCCCGATCCCCAACCCGACGCCCATGGCCGAG CCTGTGCCGCTGGCGTCGGCCCCAGCCCCGGTGATTCCGGAAGATTGGGACCTGTTCAGCGACCAGCCTGCGCCGATGGCGATTGCTCCCTTGCCTGTTG CAGAAGTTGCGCCACCACCCGTACCTCAAATCAGCGTGCCGATCGAGCCGGCACCCCTGCGCGAACCGCCCGTGGCTATCGTTGAGCCCCCGGTCAATCC GGTCAGCCCGGTCGACCATTCGCAACCCGACCTGTTGCGAGCCTTTCTGCGCGGCGCCGGGCTGGATCAAGTGCGCCTGGAAAAGGCCCAGGCCGAAGCG CAGATGGAAAGCATAGGCCGCAGTTATCGATTGATGGTCGAAGGCCTGATCGATGTCCTGCGCGCCCGTAGCAGCCTCAAGGGCGAGTTTCGCATTCAGC AGACGATGATTCAGCCGGTGGAAAACAACCCGCTGAAATTCGCTCCCAACGTCGATGAGGCCTTGCTGCTGCTGTTGCGCCACACCAATCAGGCGTTCAT GGCGCCGGACCTGGCGGTGCGCGACAGCTTCGATGACTTGCGTGCCCACCAGTTGGCGGTGATGGCCGGTGTGGAAGCGGCGATCAAGCATCTGCTGGCG CGTTTCGAGCCGGCACAACTGGAAGAGCGCATGGGCAAGCCCGCTGGCCTGTCGAGCATTTTCAATGGTTCACGACAGGCCCAGTACTGGCAGCAGTTCA CCGAGCTCTACAGCAATATTTCCCGTGAGGCCCAGGAGGATTTCCAGGACCTGTTCGGTCGGGAATTCAGCCGTGCCTACGAAGAACACAGTACCAGGCA ACGCCGCCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTGGCCGTTGCATAACGGCATTCAGAGCAAAGAACGGAACAACGGATAGCTGAAACGTCATTGAGGACGCAGGATGATTCACAGGTTTTTACTCGCAG TCGCCACCGCGCTTCTGCTGACCGCGTGTGCCAAGGAGGCCACCAAACCCCAGCCCGAAGAGGCTGAGGCCGACACGGCCGCCGTCGAGTTGCACTTTCA CGCCATCGCCGGGCTCAACCCCGGAGCCACTGGCCAGCCGGCCCCGGTCCGGGTGCGCATTTTCGAATTGAAGAATGCCGCCACCTTCGGTCGTTCCGAT TATTTCGCACTGGCCGAACGAGCCCAGGCGACGCTCGGTGCGGATCTGATCGACCAGGACGAAGTGCTGATCCAGCCTGGCCAGCAGTTGAGTCTGCAGC GTGACCTCGATCCGGCCACCCGCCATATCGGCGTGCTGGTGGGGTATCGCGAGCTGGATCAGTCGCTGTGGCGCACGGTGATGAACGTCCCGCCGCGCCA
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| Amino Acid Sequence |
>type VI secretion protein
MPLCLTITSYHKITPGQCSEKSMDQGVMAIGRNSDNDWVLPDPERLVSGKHCVIQYKDGRYYLTDNSTNGVELVKAGIRLRKGNSEPLQDGEVIRIGDYE IQARIDFNLPVTDNNPFADSSNSFEALMGRQGAGVAAPTSSPMTPPAHFQGVSAMDTLPDLFDFLAPTTVPPATQSDHVPAEQHDFRPPTPIPNPTPMAE PVPLASAPAPVIPEDWDLFSDQPAPMAIAPLPVAEVAPPPVPQISVPIEPAPLREPPVAIVEPPVNPVSPVDHSQPDLLRAFLRGAGLDQVRLEKAQAEA QMESIGRSYRLMVEGLIDVLRARSSLKGEFRIQQTMIQPVENNPLKFAPNVDEALLLLLRHTNQAFMAPDLAVRDSFDDLRAHQLAVMAGVEAAIKHLLA RFEPAQLEERMGKPAGLSSIFNGSRQAQYWQQFTELYSNISREAQEDFQDLFGREFSRAYEEHSTRQRRR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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