Pseudomonas umsongensis 20MFCvi1.1, D470_RS0113755
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis 20MFCvi1.1 D470DRAFT_scaffold00005.5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACATCGCCACCCGCGATCGCCTGCAACCGTCCCTGCTGGATCGGTTGACCGACGACGACCCAGGCAACCTCAAGGAAAGCGCCGACAAGCGCGTGCTGT CCCTGACCCAACTCAAAGCCTCGGTGCTGCGGGACCTGGCGTGGCTGCTCAACACCACGTCATTGCTCAGCGCCGATGCGACGCTGCACACACCGGCCGG CACTTCGGTGGTCAACTTCGGGCTGCCAGCCCTGGCCGGCAACAGTGCATCGAACGTCGATATCGCGGCGCTTGAAGCACTGATCCACCAGGCCATCGCC ACGTTCGAGCCGCGAATTCTGCGCCATACCCTGCGCGTGCGGGCCCGGGCATCCGCCGAGATGAATCACAACGCCCTGAGTTTCGAGATCGAAGGCGATC TCTGGGCGCAGCCAGTGCCGCTGCGCCTGATGCTGCAAACCGACCTGGACCTGGAATCCGGCCATGTGCGAGTGGTCAACGCCGACCAGCGGAGACACTC
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| DNA Sequence for Gene |
>D470_RS0113755
ATGAACCCGCGCCTGCTGGAACTGTACAACCAGGAACTGCACCACGTGCGCGAAAGCGCGGCGGAGTTCGCCCAGGAGTACCCGAAAATCGCCAGCCGGC TGACGTTGTCCGGCATGGACTGCGCCGATCCGTACGTCGAGCGCTTGCTGGAAGGGTTCGCCTACCTGACGGCGCGGGTACAGCTCAAGCTCGATGCCGA ATACCCGACCTTCACCCACAACCTGCTGGAAATCGCGTACCCCCATTACCTGGCGCCAACACCGTCGATGACCGTGGTGCAATTTCAGGCAGACCCCGAT GAAGGCTCACTGAGCAGCGGCTTCCCGTTGCCCCGGGATACGGTTCTGCGCGCAGCCCTGGGTCGCGAAAGCCAAACCTGCTGTGAGTACCGCACCGCCC ATGCGGTGACGTTGTGGCCATTGCAGGTCAGCCAGGCCGAGTACTTCGGCAACCCGTCCGCCGTGCTCGGGCGCCTGGCCGCCAGTGCCCCCAAGGCCAA GGCTGGCCTGCGCCTGACCCTGCGCACCGGTGCCGAACTGCCTTTCAACAGTCTGGCCCTGGACAACCTGCCGTTGTACCTCAACGGCGCCGACGAACAA CCCTTTCGCCTCTACGAACAGTTGCTGGGTAACGCCTGCGCCGTCTTCGCCCGTCAGCCCGGCGGCGATTGGGTAGAACGCCTGCCCCAGGATGCACTGC GCTCCGTGGGGTTCGACGATACCGACGCCGCGCTGCCCGTGGTGTCGCGAGCCTTCCAGGGCTATCGCCTGTTGCAGGAATACTTCGCCCTGCCCCGCCG CTTTCTGTTTGTCGACTTCACCGGGTTGAGCCGGGCGGTCAAACGCTGCCAGGGCCAGGAGCTGGAATTGATCGTGCTGTTCGACCGTCACGATCCGAGC CTGGAAGGCAGTGTCGGTGCCGCACAGTTCCTGCCGTTCTGCACCCCGGCAATCAACTTGTTTCCCAAGCGCCTGGATCGCATCCACTTGTCGGAACGGG TGAATGAACACCATGTGATCGCCGACCGTACCCGGCCGATGGATTTCGAGATTCATTCCCTGACCGCCCTCACCGGCCATGGCACCGGGTCGGAACAGCC TTTTTTGCCGTTCTACGCCGTCCGCGATCCGTCTCGCTACGGCCGCGATCAGGCGTATTACACGGTGCGGCGCGAACCCCGCATGCTCTCCAGCGGCCAG CGGCGCAACGGCCCACGTTCGACTTACATCGGCAGCGAAACCTTCGTCAGTCTGGTGGACAGCCAGCAGGCGCCCTATCGTCACGACCTGCGCCAATTGG GCGTAACGGCGTTATGCACCAACCGCGACCTGCCCCTGTTCATGAGCGTGGGCAACAACAAGACCGACTTCACCCTGGCCGACAGCGCACCGGTAGCGGC GGTACGCTGCGTGGCCGGCCCGAGCCGCCCACGCGCCAGCCATGCCCACGACGCCAAGGCCTGGCGGTTGATCAGCCAGCTTTCGCTCAATTACTTGTCC CTCAGCGAGCAAGGCCAGGGCGCCGCCGCCCTGCGCGAGCTGCTGCGCCTGTATGGCGACGACAACGATGCAGCCTTGCAATTGCAGATCGAAGGCCTGC GCGAAGTCAGCAGCAAGGCCTGCACCCGACGTTTGCCAATGCCGGGCCCGATCGTGTTTGGCCGCGGCCTGGAGATCACCCTGGAATTCGATGAGAACGC GTTTCGTGGCACGGGCGTCTTTTTGCTCGGTGCAGTGTTCGAGCGCTTCCTGGCACGTTACGTGTCGATCAACAGTTTTACCGAGACGGTGATCCGTACC ACCGAGCGCGGCGAGATCATGCGATGGAAAGCCAAACCCGGACGTCGTCCGACCCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATACCCTGGACGCGATGCACCAGGAGCCCTGGGAATACGACTTCTTCCAGGCATTACGGCGCATCGAGTGCGAATCGCCTGAGCTTCCGCGCCTGGGTCA TTCGTTGCGCCTGGCCGATGACCCCTTGCGCCTTGGGCAACAAGCCGATTGCACCTTCGCCCCCTCGACCCTGGCCTCGGTACAGCCGGGCATCGACGGT TCGCCGGCACGTCTGGAACAATTCTTTTTTGGCCTCGGCGGCCCCAACGGCCCGTTGCCGTTGCACCTCACCGAATATGTGCGTGAACGCCAGCGCAACA ACGCCGACAGCACCAGCAAACGCTTTCTGGATGTATTCCACCATCGCCTGCTGAGCCTGTTTTACCGGGCCTGGGCCGAAGCGCGACCGACAGTCAGCCA TGATCGCCCGGACGATGACTACTGGTCGGCACGTCTGGCAGCGCTGAGCGGTCGAGGCATGCCGAGCCTGCTCAAACAAGGCCTGATACCCGACACGGCG
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| Amino Acid Sequence |
>type VI secretion system protein ImpG
MNPRLLELYNQELHHVRESAAEFAQEYPKIASRLTLSGMDCADPYVERLLEGFAYLTARVQLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQFQADPD EGSLSSGFPLPRDTVLRAALGRESQTCCEYRTAHAVTLWPLQVSQAEYFGNPSAVLGRLAASAPKAKAGLRLTLRTGAELPFNSLALDNLPLYLNGADEQ PFRLYEQLLGNACAVFARQPGGDWVERLPQDALRSVGFDDTDAALPVVSRAFQGYRLLQEYFALPRRFLFVDFTGLSRAVKRCQGQELELIVLFDRHDPS LEGSVGAAQFLPFCTPAINLFPKRLDRIHLSERVNEHHVIADRTRPMDFEIHSLTALTGHGTGSEQPFLPFYAVRDPSRYGRDQAYYTVRREPRMLSSGQ RRNGPRSTYIGSETFVSLVDSQQAPYRHDLRQLGVTALCTNRDLPLFMSVGNNKTDFTLADSAPVAAVRCVAGPSRPRASHAHDAKAWRLISQLSLNYLS LSEQGQGAAALRELLRLYGDDNDAALQLQIEGLREVSSKACTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVFERFLARYVSINSFTETVIRT TERGEIMRWKAKPGRRPTL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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