Pseudomonas umsongensis 20MFCvi1.1, D470_RS0113730

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas umsongensis 20MFCvi1.1 D470DRAFT_scaffold00005.5, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ATATCAATGCCGCATTCCCCAAGCCCAAGGGCTAACCACGAGATTCAAGCGCCATGACTTACCGCATCAATGAGTTCCAGTTCCAGCTGCCGGCAGGCGA GCTGCAAGACGCGACGATCAACATCCTCAAGTTCCCCGAACTGGGCACCTCGCTGATTGTCAGCCGCAGCTTGCTGGCCGAGGGCGAAACCCTGCAAAGC AACTTCGACGACCAGCTCAAGCGCCTGGAAAAACAAGTGCAGGACTTGCGTTTTCAACCGGGCGTCGCCGTGCGCCTGGGCACCAGCCAGGAGGTCGAAG GCATCGAGTTGCGCAGCCAGTTCAACAAGGGCAACGACAAAGTCTTCCAATATCAGTTGGCGCTGGTATTGCCCGGCACCCGCAAAATGCTCGCCCTGAG CTACGTGAAGGCGGAAAAACTCGGCGATGCCGAAGCCGCGCATTGGGCAACCATCAAGAGTTCGCTGTTGTTCGACGTTCCGGCCTGATGAGCACCCTGC
DNA Sequence for Gene
>D470_RS0113730
ATGTCTGACGCACTCTGGGCCGCCCGGCTGGGCGATGCCCTCGACCACACCTCGATGATGGCCGACATCCTCGGCGGCGTGCTGGAGGTGGCAGCGAACA TCGCGATCACCGCGCTGGCGACGGCTGCCGTGGTGGCGGCCACGGGCATCACCGTCGCCACCGGCGGCCTCGGCTGCTTTCTGCTCGGCGCGGTGGTGGG CACCATCGTCGGCCTTGCCATGAGCAAGACCGGGGCCGACAAGGGCCTGAGCAACCTGTGCGAGAGCTTCAGCAATGCGCTGTTCCCGCCCACGGTGCAG GCGACGATTCTCACCGGTTCCACCAACACCCTGACCAACAACATTCCCGCCGCCCGGGCCGCCGGGGCGATTCCGTCCCATGTCGCGCCGGCCGGCACCG AGCTGGAGGCACCCGAGCCCGAAGCCGAGCCCAGCTATCTGGACATGGCCGAGAGCTTCTTCTCCCAGATGTGGCGCCCCACCGTCGCCACTCCGGCGCC CGGCGCCGTGCCCAAGCCGCTGGACCTGCTCGTCTGCATGAAGCATCCGCCGATGCCGCCGCAGTTCATGGCCGAGGGCTCGGACAAGGTCACCATCAAC GGCCAGCCCGCCGTGCGCAGCGGCGACCGTAGCACCTGCGATGCCAAGGTCGTATCGTCCGGGCTGATCTCATCGAACGTGACCATTGGTGGCGGTTCCG TGGTGGTGCGTGAGATCCGCAGCGGCAAGACCCCGGGCGTGGGGCTGGCGGTCACCGCGTTGCTGATGCTCAAGGGCGGCAAAGGCAAGTTCTTCAGCAA ACTGCCGTGCATGCTGATCGGCGGCGCGACGTCGATGGCTGTCAGCAGCGCCATGGGCGCCATGGCCAACGCCGCCATGGGTTCGTCGAACCCGGTGCAT GCTGCGACCGGGGCCAAGGTGCTGGGTGGGGACGAAGAGCTGGATTTCGTGCTGCCGGGCATCTTGCCGATCGATTGGCAGCGCTTCTACAACAGCCGCG ACGAACGACGCGACGGGCTGTTCGGCGCCGGTTGGAGCGTGTCCTACGAGGTGCGGGTTGAAATCCTGCCTCACCCGGAGGGCGGGGAAACGCTGGTGTA CACCGATGAGCAGGGCCGGCGCATCGATATGGGGTCGATTCCTCTGGGCGGCGCGGTGTTCAGTGCGGGTGAAGGGCTGAGTGTTCGGCGGCATCGCAAT GGGGAATTGTTGATTGAAAGCGATGACGGGTTGTATCGGCTGTTCGACGGTACACCCGGTAATCCGTCGTTGTTGCGCCTGAACCAGCTCGGCGACCGCA ATGACAACCGCATCCACCTCGACTATGACGACGGCGGGCAGCTTGTTCGGCTGCGGGACACCTTCGATCTGGTGCAGGTCGAGCTGATTCAAGAAGACCG TCGCGTGGCTCGGGTGGAACGCCTGTACCCCGACCAACACCGCGAAGTACTCGTCAGTTACGGCTATGACGCAGCCGGCAACCTGGCCGAAGTGCGCGAC GCCACCGGCCAGGTGCAACGGCGCTTCGCCTACGACGCCGGGCGGCGTATGGTTGAGCATCAGTTGCCCACGGGGCTGCGGTGTTTCTATGAATGGGCTT ATATCGAGGAAAAAGAATGGCGCGTGGTCGGGCACTGGACCGACGAAGGCGACACTTACCAGTTCGACTATGACCTGAACGCCGGTGCAACGCGCATCAC CGACGGCTCACAGCGCATCAGTACTCGCCACTGGAACACCCAGCACCAGATCACCGAGTACACCGACAACCTCGGCCAGACCTGGCAGTTCGAGTGGAAC GACGAACGCCAATTGCTCAGTGCCACCGACCCGCTGGGCGGGCGCTATGAATACAGCTACGACGACGCCGGCAACCTGATCGGCGAAACCGACCCGCTGG GCCGCAGTGAATCGACCCTATGGCTCGAGCACTGGGCCTTGCCGCTGGTGGAAACCGATACCGCGGGCAACAGTTGGCAATATCGCTACGATCAGCGCGG CAACTGCATCGCCGAAACCGATCCGCTGGGCCATGTAACGCGGTACCGCTACGACACCCAGGGCCAGGTCGTCGAGATCATCGACGCCACCGGCAAAAGC AAAAGGCTGCGCTGGAACCCGTTCGGCCAACTGGTCGAACACATCGATTGCTCGGGTTATCCGACGCGGTTCAGCTATGACAACCGGGGCTATCTGCAAA CGATCACCGATGCCCTCGGCGAACGCACCCAATTCAGTTACGACGCCCAGGGACGGTTGCTCAGCAGCCAATTGCCGGACGGCCGCACCGAGCAGTATCA GCGCGACGTCAGTGGCCAGTTGACCGGCTATACCGACCCGGCCGGGCACACCACGCTCTACCAACACAACCGTCGCGGCCAGGTCCGTCAACGCACCGAC GCCCATGGCCGGCAGGTGCAGTTCGGGTACGACCGCTATGGGCGGCTGCAGGCGCTGACCAACGAAAATGGCGAGAGTTATCGGTTTGCCTGGGATGCTG GGGATCGACTGATTGAACAACAGGATCTGGATGGCAGTGCCAAGCGCTACACCTATGACCTGCTGGATAACGTCGCGGCGGTCACGGCTGTTCCGGCGCC TTATGGCAACGGCCTGGCCGTCGTCCCCGAGTCGCCTCCCGCTCCCATCGTTCATCGGCTGGAACGGGATGCCGTTGGCCGGCTGATCGCCAAAATCACC GACGATGGCCGCACCGACTACTCCTACGACTCACTGGACCAGCTCACCGCTGTCACCTTCACCGACCACCACGGCAACGCACAAACCTTGAGCTTCGCCT ATGACGCCCTCGGTCAATTGCTCGAAGAACAAAGCGCGGCCGGCAACCTGCACTACCACTACGACGAACTCGGCAATCTCATCCAGACCCAACTGCCCGA CGGCCGCTGGCTCAATCGCCTGTACTACGGCAGCGGCCACCTGCACCAGATCAACCTCGACGGCCAGGTCATCAGCGACTTCGAACGCGACCGCCTGCAC CGCGAAGTGCTGCGCACCCAAGGCCAGATCAGCACTCGTAGCGAATACGACCGCAGCGGGCGTTTACGCTCACGCCAACGCCGACACAGCAGCCAGCCAT CGCTGATGCCGGCAGCGGTGCAGAAACATTTCGAGTACGACCCCGCCGACAACCTGATCGGCAAACTCGACCAGCAACCCGCCACGCAACACCGCCAACT GCTGCACTACGACGCCACCGGCCGCATCATCGCCAGCCAGGACAGCCTGCACGGCCAGCGCGAAACCTTCGCCTACGACGCCGCCGCCAACCTGCTGGAT GGCCCACAAACCGGCGCCGGGCTGGTGGTGCACAACAAACTGCTGACCTATCAGGACAAGCGTTACCGCTACGACGCCTTTGGCCGGATGATCGAAAAAC GCAGCGCTCAACGGGGTCTGCAGCGCTTCGCTTACGACGCCGAAAGCCGGTTGATTGAAGTGCGCAATGAAAACGGCAGCGTGGTCAGAATGACCTACGA CCCACTGGGCCGGCGCATCGAAAAAACCGTACACGACACCAACGGCTACCCCCTCGGCGAAACCCGCTTCACCTGGGACGGCCTGCGCCTGTTGCAGGAA CATCGCCATCAGCGGACCAGCCTCTACCTCTACGAAGACGAAGGCTACGAACCCTTGGCCCGGGTCGACGGCACCGGCCCACTGCAAAAAATCCGCTACT ACCACAACGACCTCAACGGCCTGCCGGAACAACTCACCGAAGCGGACGGCCACAACGTCTGGCAGGCAACTTATCGGGTGTGGGGCAACACGTTAGAAGA GGTGCGCGAGCCGTATTACATTGAAGAGCAGAACCTGCGGTTTCAGGGGCAGTACTTGGACCGGGAGACGGGGCTGCATTTCAATACGTTCAGGTTTTAT GATCCGGATGTGGGGCGGTTTACTACGCCGGATCCGATTGGGTTGGCGGGGGGATTCAACCTCTATCAATACGCACCGAATCCGATTGGGTGGGTGGATC CGTGGGGGTGGGAAGTTTGTCGACTCAGCGCCTCACAGAAGAGAGCGATGGGGCCTGCACCTAAGGGTATGGTAAAGCCGCATTACCATCATATCGTCCG CGAAAAAGCTCCGAAAAGCTGGAAAGCTCAAAATCAAAAGTACATTACCGACTCGCAAAAAATTCTGGCCAAACACAAAATTGGCCTAAACAACGACCCG CGCAACTTCACCTGGGCCCAAAATGGTGGAGGGAATCACTCGATAGCCAGCGCCAAAAAAGTCTATGAAATACTACAGAAAGCAGACGTCGGCGGGCTGG CCAGTGTCCAAAACGCATTGAAAAACATGGGTGCTCAAATGACAAAAGGTATTTTTTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ATGAACAACCCAGAAGAAATTTATGAAAAGAACATTAAAACTTTATTAGCCATTCACGCAGACATCGCGTCGGGAAATGCAGCCTCACTAAAAAAGTGCC TAGAGAAAAATTCCGTTCTATTGCACTTGCCCATGTATGGTCTTGATGGGCATGAAACCCTGCTGCACATGGCCGCTGAACAGGGGCAAACCGAAATTTG CCGCTTATTGGTGTCTTTAGGTATTGCGCTGGACCAGCCTGCCGCCAGTTCCGGCAATAGCACGCCACTTGCCGCAGCCGCTGGCAATGGACACTTACAA ACATGCCAATGGTTTCTTGAGGCCGGTGCTTTGGTGGATGGGTGGCCTAACAGCATAACCACCCCGCTGATTGACGCGATTACCTTTGGGCATCAGGACG TCGTCAATCTTCTTGTAGAACACCATGCCAACATCAATCGACTGCACACCAGACTGAATACTGCGCCATTGGACATCGCCAACACCTGGGGATTTACAGA
Amino Acid Sequence
>type IV secretion protein Rhs
MSDALWAARLGDALDHTSMMADILGGVLEVAANIAITALATAAVVAATGITVATGGLGCFLLGAVVGTIVGLAMSKTGADKGLSNLCESFSNALFPPTVQ ATILTGSTNTLTNNIPAARAAGAIPSHVAPAGTELEAPEPEAEPSYLDMAESFFSQMWRPTVATPAPGAVPKPLDLLVCMKHPPMPPQFMAEGSDKVTIN GQPAVRSGDRSTCDAKVVSSGLISSNVTIGGGSVVVREIRSGKTPGVGLAVTALLMLKGGKGKFFSKLPCMLIGGATSMAVSSAMGAMANAAMGSSNPVH AATGAKVLGGDEELDFVLPGILPIDWQRFYNSRDERRDGLFGAGWSVSYEVRVEILPHPEGGETLVYTDEQGRRIDMGSIPLGGAVFSAGEGLSVRRHRN GELLIESDDGLYRLFDGTPGNPSLLRLNQLGDRNDNRIHLDYDDGGQLVRLRDTFDLVQVELIQEDRRVARVERLYPDQHREVLVSYGYDAAGNLAEVRD ATGQVQRRFAYDAGRRMVEHQLPTGLRCFYEWAYIEEKEWRVVGHWTDEGDTYQFDYDLNAGATRITDGSQRISTRHWNTQHQITEYTDNLGQTWQFEWN DERQLLSATDPLGGRYEYSYDDAGNLIGETDPLGRSESTLWLEHWALPLVETDTAGNSWQYRYDQRGNCIAETDPLGHVTRYRYDTQGQVVEIIDATGKS KRLRWNPFGQLVEHIDCSGYPTRFSYDNRGYLQTITDALGERTQFSYDAQGRLLSSQLPDGRTEQYQRDVSGQLTGYTDPAGHTTLYQHNRRGQVRQRTD AHGRQVQFGYDRYGRLQALTNENGESYRFAWDAGDRLIEQQDLDGSAKRYTYDLLDNVAAVTAVPAPYGNGLAVVPESPPAPIVHRLERDAVGRLIAKIT DDGRTDYSYDSLDQLTAVTFTDHHGNAQTLSFAYDALGQLLEEQSAAGNLHYHYDELGNLIQTQLPDGRWLNRLYYGSGHLHQINLDGQVISDFERDRLH REVLRTQGQISTRSEYDRSGRLRSRQRRHSSQPSLMPAAVQKHFEYDPADNLIGKLDQQPATQHRQLLHYDATGRIIASQDSLHGQRETFAYDAAANLLD GPQTGAGLVVHNKLLTYQDKRYRYDAFGRMIEKRSAQRGLQRFAYDAESRLIEVRNENGSVVRMTYDPLGRRIEKTVHDTNGYPLGETRFTWDGLRLLQE HRHQRTSLYLYEDEGYEPLARVDGTGPLQKIRYYHNDLNGLPEQLTEADGHNVWQATYRVWGNTLEEVREPYYIEEQNLRFQGQYLDRETGLHFNTFRFY DPDVGRFTTPDPIGLAGGFNLYQYAPNPIGWVDPWGWEVCRLSASQKRAMGPAPKGMVKPHYHHIVREKAPKSWKAQNQKYITDSQKILAKHKIGLNNDP RNFTWAQNGGGNHSIASAKKVYEILQKADVGGLASVQNALKNMGAQMTKGIF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site