Pseudomonas umsongensis 20MFCvi1.1, D470_RS0112955
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis 20MFCvi1.1 D470DRAFT_scaffold00005.5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TACCAACCTCAACCTTGAAGACATGGTCCGCGACGGGCGCTTTCGTGAGGATTTGCTCTATAGGCTGAACGTCATCACTTTGCACCTGCCGCCGCTTCGC GAACGCAGGGAAGACATCCTGAACCTGGCTGACCGTTTCCTGGCGCGCTTCGTCAAGGAATACTCGCGTCCGGCCCGGTGTTTCAGCGACGAGGCCCGCG AGGCGCTGCTCAGCTACCGCTGGCCCGGCAATATCCGCGAGCTGCGCAACGTGGTGGAACGGGCGAGCATTATTTGTCCGCAGGAGCGGGTCGAGATCAG CCACTTGGGCATGGCCGAAGCTCCGACCAACAATACGCCACGCATTGGCGCCGCGTTGAGCCTGGATGAGTTGGAGAAAGCCCACATCGGCGCGGTCCTT GCCACCGCCGATACCCTGGATCAGGCGGCCAAGACCCTGGGTATCGACGCCTCGACCCTGTACCGCAAACGCAAGCAGTACAACCTGTGAGCTGCACCCG
|
|
| DNA Sequence for Gene |
>D470_RS0112955
ATGAAACTGGCGATGACATTGCGCACCCGGTTGTTCCTGAGTATTTCAGCCTTGATCACCGTGGCGCTGCTCGGGCTGTTGCTCGGGCTGGTCAGCGTGA TGCAGATGGCTGGTACGCAGGAGGCCCTGATCCGTGACAACTTCGTCAGGCTGGATCTGGGATTGAAGCTGCGCCAGACCCTGGGTGATCAACTGATCAT CATGCTCGGCGAGAAGCCTGATCCCGCGGCGCTCGAGGCATCCCGACAGCATTACCTCGAATTGCTCGATGAAGGCATTGCTCGCGAGCCGTCCAGCGAG GGCGCCCAGTACGGTTTCAAAAAGGCCAAGGCTGATTACCAGAGCTTTCTGCAGGCCTACGATCTTTCCCGCGATACGGCACAGGTGCTCACTGGGGGCG GGGATCTCACGGAAAAATTCAACACGCTGCGCAACGGTTTGATCGCCGAACAGAAGCGCGCGCTGGATAACATCAGTGAAACCGAACGCCAGGCCCGGGA CCGCGCGTTGCTGATTGCCGGCCTGCTCGGGTTGATCGGGGTGGGGGTGCTGTTCATCGGGTTCATTACCGCCCATGCGATCGCCCAGCGTTTCGGAGCT CCGATCGAGGCCCTGGCGGCGGCCGCTGACAACATCGGCCAAGGCAATTTCGAAGTGACTCTGCCGATTTCCTCCGCAGTGGAAATGAACCAGCTGACCC GACGCTTCGGAATCATGGCCGAGGCCCTGCGACAGCACCAAGCCACTAATATCGACGAGCTACTCGCCGGACAGCAGCGTTTGCAAGCAGTGCTCGATAG CATCGACGACGGTTTGCTGATCATTGATCGTCAAGGTCAGCTCGAGCACCTCAACCCGGTGGCTCAGCGCCAGTTAGGCTGGGACACCGAGCGTCTCGGC CAAGGGCTGGGCACGGCACTTGAGCGTCCCGAACTGGATGAACAACTGCACCTGGTGCTGCGCGGCGGCACCCTGGAGCGAGTGCCGGACGACCTGAGCA TCGAGGTTGACGGGGAGTCGCGATTGCTGACGTATAGCCTGACACCGGTTAGCCATACCCAGGGGCATATTCTCGGCGCCGTGATGGTGTTGCATGACGT CACCGAACAGCGTGCCTTCGAACGGGTGCGCAGCGAGTTCGTCTTGCGTGCTTCCCATGAGTTACGCACGCCAGTCACCGGGATGCACATGGCATTCGGC CTGTTCCGCGAGCGGGCGCATTTTGCCGAGGATTCCCGTGAGGCCGACTTGCTGAACACCGTGAATGAAGAAATGCAGCGCTTGATGCAGTTGATCAACG ACCTGCTGAATTTCTCTCGCTATCAGAATGGCCTGCAAAAACTCACCCTGGCGCCGTGCTCCATCAAAGATTTACTGGAGCAGGCCCAGGCACGCTTTGC CGGCCCGGCGCAGGAGAAGGGCATTGAGCTGTTGGTGGAAGTGCAGGGAACGTTGCCACGGCTGCAAGCCGATCAGGCGCAACTGGAGCGGGTGCTCGAT AACCTGATCGACAACGCCTTGCGTCATACCTCCCGCGACGGGCTGATTCGTTTGCAGGCTCGACGTCATGGGGAGCGGGTGATTATCAGTGTCGAAGACA ACGGCGAAGGCATTGCCTACAGCCAGCAAGGAAGGATATTCGAGCCTTTTGTTCAGGTCGGCCGCAAGAAGGGCGGCGCCGGGCTCGGTCTGGCGCTGTG CAAGGAGATCGTGCAGTTGCACGGTGGGCGGATGGGCGTGTATTCACGGCCGGGGCAGGGTTCGCAGTTCTACATGGCGCTGGCGGTATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCTGAACCCTCTCAGTCTTCGTCATCCAGACGCCGCGTTGCCTGTCGGCGGCCACGGGTAATCAATTCGATGAATTGCACAGCGCTCAATGGGTGCGCG AACAGCCAGCCCTGACCGAACTTCACCCCCTCGCTGCTCAGAAACTCTGCCTGGGCTTCATGTTCGATGCCCTCGGCAATCACCTTGAGTTGCAGGGCCT GGGCCATGCGAATGATGTGCGGTGCCACGCCGCTGCTGGCGGCGTCATGACCCAGCGCGTCGATAAATGCCTTGTCGATTTTCAGGCAGTCCACGGGCAG TGTTTGCAGGTAGGCGAGGCTGCAATAGCCAGTGCCGAAGTCATCGATCAGCACCTGATGCCCGACATCGCGCAAGGCCTGCAGGTTTTCTCTGGCCACC ACGACATCAACCAATCCGCGCTCGGTCACCTCAAAGGCAATCTGTCTGGCGGCTACACGGTGCAAGGCCAGCAGGCGCGCCATCACCTGACCGATACGCG
|
|
| Amino Acid Sequence |
>histidine kinase
MKLAMTLRTRLFLSISALITVALLGLLLGLVSVMQMAGTQEALIRDNFVRLDLGLKLRQTLGDQLIIMLGEKPDPAALEASRQHYLELLDEGIAREPSSE GAQYGFKKAKADYQSFLQAYDLSRDTAQVLTGGGDLTEKFNTLRNGLIAEQKRALDNISETERQARDRALLIAGLLGLIGVGVLFIGFITAHAIAQRFGA PIEALAAAADNIGQGNFEVTLPISSAVEMNQLTRRFGIMAEALRQHQATNIDELLAGQQRLQAVLDSIDDGLLIIDRQGQLEHLNPVAQRQLGWDTERLG QGLGTALERPELDEQLHLVLRGGTLERVPDDLSIEVDGESRLLTYSLTPVSHTQGHILGAVMVLHDVTEQRAFERVRSEFVLRASHELRTPVTGMHMAFG LFRERAHFAEDSREADLLNTVNEEMQRLMQLINDLLNFSRYQNGLQKLTLAPCSIKDLLEQAQARFAGPAQEKGIELLVEVQGTLPRLQADQAQLERVLD NLIDNALRHTSRDGLIRLQARRHGERVIISVEDNGEGIAYSQQGRIFEPFVQVGRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGSQFYMALAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|