Pseudomonas umsongensis 20MFCvi1.1, D470_RS0111040 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis 20MFCvi1.1 D470DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATCAGCGACCAGAAGATCAGCGCCAGAATGCCCAGCACGCCGTCATGGTTGACGGGCACGCCATAGCCACCGGAAAACACTTCTTTTAGGGTGTACAAC GGGCTCGTGCCGATGTCGCCATAAACCACTCCGACCGCCGCAACCAGCATGCTGATCGGCTTCGCCGCCGAATGTCCGCCGGCTATCGCCTGACTACTTG CCTGCCCCATCCATCACTCCTACTACTCAGATCCGGGCTTCTTCAAAGAAGCACTATGATTTGTGGTGCAGCATGCACTGTTTTACTTGTTGTTACAGAC GATTTATTGACTGTAAAAAATCGGTAAAGCGTAAAGGCGCGAAGCATAGCGCAGCACTCGTCGTATTTCCCTGCATAAAGCTGGTCAAGTGCGCCGCCCA TCGTTAGAATTGCGCACTTTTTGACCAGAGGGTGCAACATAGCGCCCGTCTGTCGCCTTGCCGTCATCGGCTGGAGGCGTCACAAATACCGAGGTTAGAC
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| DNA Sequence for Gene |
>D470_RS0111040
|rimO
ATGTCCACCACTCCTGCGCCGGCCAATCCAAAGGTTGGCTTCGTATCCCTGGGTTGCCCGAAAGCACTGGTCGACTCCGAGCGCATCCTTACCCAGCTGC GCATGGAAGGCTATGACGTTGTGTCCACTTATCAGGACGCCGACGTCGTGGTGGTCAATACCTGCGGCTTCATCGACTCGGCCAAGGCTGAGTCCCTGGA AGTGATCGGCGAAGCCATCAAGGAAAACGGCAAGGTCATCGTGACCGGCTGCATGGGCGTCGAAGAAGGCAATATCCGTAACGTGCACCCGAGTGTGCTG GCCGTGACCGGTCCGCAGCAGTACGAGCAAGTGGTCAACGCCGTGCACGACGTCGTGCCGCCGCGTCAGGATCACAACCCGCTGATCGACCTGGTGCCGC CGCAAGGGATCAAACTTACCCCACGCCACTACGCCTACCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCGATGCGCGG CAAACTGGTCAGCCGCCCGGTCGGTGACGTGCTCGACGAGGCCCAGCGCCTGGTCAAGTCCGGCGTCAAAGAGCTGCTGGTGATTTCCCAGGACACCAGC GCCTATGGCGTCGACGTGAAATACCGCACCGGTTTCTGGAACGGCGCGCCGGTGAAAACCCGCATGACCGAACTCTGCGAAGCCCTGAGCACCCTCGGTG TCTGGGTGCGCCTGCACTACGTTTACCCGTACCCGCACGTCGACGAGCTGATCCCGCTGATGGCCGCCGGGAAAATCCTGCCGTACCTGGACATCCCGTT CCAGCACGCCAGCCCGAAAGTCCTCAAAGCCATGAAACGCCCGGCTTTCGAAGACAAGACCCTGGCCCGCATCAAGAACTGGCGCGAAATCTGCCCGGAC CTGATCATCCGTTCGACCTTCATCGTCGGCTTCCCCGGCGAAACCGAAGAAGACTTCCAGTACCTGTTGAACTGGCTGACCGAAGCCCAGCTGGACCGCG TCGGCTGCTTCCAGTACTCGCCGGTCGAAGGCGCACCGGCCAACGATCTGGACCTGGAGATCGTTCCGGACGACGTCAAGCAAGACCGCTGGGATCGCTT CATGGCGCACCAGCAGGCCATCAGCTCGGCACGCCTGCAAATGCGCATCGGCCGTGAGATCGAAGTGCTGGTGGACGAAGTCGACGAGCAAGGCGCGGTT GGCCGCTGCTTCTTCGATGCCCCGGAAATCGACGGCAACGTGTTCATCGACAACGGCAGCAACCTGAAGCCGGGCGACAAGGTCTGGTGCAAAGTGACTG ACGCCGACGAATACGACCTGTGGGCTGAACAGATCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGCAAAAAATACGAAAAGCCCTGCTCTCTTGACGAGATGCGGGGCTTTTTTACGTCTATCGTTTTGTGGGAGAAAAAACTCGCAGCCTTACAGGAACGG CTCTTAACAGAAGGAGCAAGCGGCCATGCGCCAACATTCGGTCATTTACACACCGAAACAGAGCGACTACGAAGAACTCACCCGCGTGTGGGAGGCCTCG GTGCGCGCTACCCATGACTTTCTGCCCGACAGCTACATCGAACTGCTGAAGAACCTGGTCCTGACCCGCTACCTCGACGCCGTCATGCTGATCTGCACCA AAGACTCGCGCCAGCGCATCACCGGGTTCGCCGGCGTGGCGGCGGGCAAGATCGAAATGCTGTTCATCGATCCGGATCACCGTGGCCAAGGCCTGGGCAA GCAATTACTGCGCTATGCCCTGGAACACCTGAACGCCGATGAGCTGGACGTCAACGAGCAGAACCCACAGGCCCTGGGTTTTTACTTCAAGCAGGGCTTC
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSTTPAPANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRNVHPSVL AVTGPQQYEQVVNAVHDVVPPRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTS AYGVDVKYRTGFWNGAPVKTRMTELCEALSTLGVWVRLHYVYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKNWREICPD LIIRSTFIVGFPGETEEDFQYLLNWLTEAQLDRVGCFQYSPVEGAPANDLDLEIVPDDVKQDRWDRFMAHQQAISSARLQMRIGREIEVLVDEVDEQGAV GRCFFDAPEIDGNVFIDNGSNLKPGDKVWCKVTDADEYDLWAEQI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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