Pseudomonas umsongensis 20MFCvi1.1, D470_RS0108700 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis 20MFCvi1.1 D470DRAFT_scaffold00003.3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCAATCCCATCCATTGCTTGCCCGGCGAGCGCCCCTGATTGAGCACCTCGAACAGCACCATGTACCACCAGCTCACCACGAACAGCAAAATCGAGCCAA GCCCGGCGCCGAGTTTGCCGAGGAACGCCAGCACCATGAACAGCAGGCCCAGGATCAACCCGCGCAGGCCCAGGTCGATGGTGAACGCTAGCGCACGGAC CATCAACCCGGCCGGGCGCAGTGGCAAGTCGATGCCTTCGGGCGTTTCGACCTGATACCGCGTATCCAGTGGCGGGGCCAGCGTTGCTTTCCGTGGCAGT GCTGTGGTCTCGAGCATGGGCAACCTTGCTGTGGCCGGTTTGCGATTCGATGTCCGTTCGATGCTAGCAGCCTCTCGGGGGGAAACGACATAACTATGTA TTGCACGGTATGCGGCCGGAGGTGATTGAATGACAACATTTCTGGTCGAGGCAGCCTGTGTGCGCCTAGACTTCGCCGGTCTTCTGTTCAGGAACAACCC
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| DNA Sequence for Gene |
>D470_RS0108700
|sbcB
GTGACCTCGATCTTCTGGTACGACTACGAAACCACTGGCATCAACCCCCGTTGCGACCGTCCGTTGCAAGTGGCGGGGATTCGCACCGACTTCGATCTCA ATGAAATAGACGAGCCGGTCAATCTCTACTGCCAGCCCAGTGACGACATCCTGCCGCATCCGGCAGCCTGCGCGATCACCGGTATCACGCCTGGCCTTCT GGCCGAGCAAGGTTTGAGCGAAGCCGATTTCATGACACGGGTTCATGCCCAGCTCGCCCTGCCCGGCACTTGTGGGGCAGGGTACAACACGCTGCGTTTC GACGACGAGATGACCCGTTACAGCCTGTATCGAAACTTTTTCGACCCCTACGCACGGGAGTGGCAGGGCGGCAACAGCCGCTGGGACCTGATCGACATCG TACGCGCGGCTTATGCGTTGCGTCCCGATGGCTTCGTCTGGCCCACGGATGACGAAGGGCGGGTGACGCTCAAGCTCGAACGCCTGACCGCCGCCAACGG CATCGATCACGGGAATGCCCACGAGGCACTGTCGGATGTTCGCGCCACAATCGCCCTGGCGCGTCTGATTCGTGAAAAACAGCCGAAGTTGTATGACTGG CTGTTTCAGTTACGCAGCAAACAAAAGGTGATGGACCAGATTCGGCTGTTGCAGCCGATGGTGCACATTTCCGGACGCTTTTCGGCGGCCCGCCATTATG TCGGCGTGGTACTGCCACTGGCCTGGCATCCACGCAATCGCAACGCGCTGATTGTCTGTGACCTGCACCTGGACCCTCAGGGGCTGCTCGATCTGGATAC CGAAACCTTGCGTCAGCGGCTTTATACACGCCGTGACGATCTGGCCGAAGGCGAACTGCCCGTGCCGCTCAAGCTCATACACATCAACAAGTGCCCGGTC GTGGCGCCGTTATCGGTACTTCGTCCCGAAGATCAGCAACGTTTGGGGCTGGACATGGCGCTCTATCAGGAACGGGCGCTGCGGCTAAGTGCCGCACAAC AACTTTGGCAAGATAAAGTCTCGGGAATTTATGCCCGCGAGGATTTCGCCACGAGCTTGGACCCCGAGCAACAGTTATACGACGGTTTTATTGGCGATCG GGATCGACGTCTATGTGAGCAAGTCAGAGCCGCCGACCCTGCGCAATTAGCACAAGAGCAGTGGCCTTTCGATGATGAACGTTTGCCCGAATTATTGTTT CGTTATCGCGCACGCAACTTTCCGGATACGTTGAGCCCGGAAGAGCAAGAACGCTGGCGAATATTTTGTCAGCAGCGTTTGTCCGTGCCGGAGTGGGGCG CTCCCAATACGCTGGAAAGTTTTCTGACAGCTGCCGCCCAATTGACGATTAGTCCTACATCGTTTCAGCAAGAGGTTCTGGATGAATGGCAGATTCATGT CCAGGCATTACGCAAACGTTTGAATATTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAACGAAAATGACTTGCGATTGAATTCCGGGCATAAAAAACGCCAGCATTTGCTGGCGTTCTTTTGGTCGCGGATCAGTCTGCGACGTGCTTGCGGCTTA GCCCAGCAGGGTAGCCCAGCCTTCAACCACGTCACCGCCCCACTTGGCTTTCCACTCTTTCAGAGTTTTGTGGTTGCCACCTTTGGTTTCGATGACTTCG CCGTTGTGCGGGTTTTTGTATTGTTTAACTTTGCGAGCACGCTTGGTGCCAGTAGTTTTTACTGCGCCGCCACGTGGAGCCTTGGTTTTGGACTCTGGAT CCAATAGGGCAATGATGTCACGCAGGGATTTGGAGTATTCGCCCATCAGGGTGCGCAATTTGCCTTCGAATTCCAGCTCGGTTTGCAGTTTGTCGTCTTG GGACAGGTTCTTCAAACGGGCTTGCAGCTCTTTGATAGCTTCTTCGGTGGCGCGATATTCGTTGATCAAGGACATGAGGACTACCTTATGTTGGCGCTGG
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| Amino Acid Sequence |
>exonuclease I
MTSIFWYDYETTGINPRCDRPLQVAGIRTDFDLNEIDEPVNLYCQPSDDILPHPAACAITGITPGLLAEQGLSEADFMTRVHAQLALPGTCGAGYNTLRF DDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDIVRAAYALRPDGFVWPTDDEGRVTLKLERLTAANGIDHGNAHEALSDVRATIALARLIREKQPKLYDW LFQLRSKQKVMDQIRLLQPMVHISGRFSAARHYVGVVLPLAWHPRNRNALIVCDLHLDPQGLLDLDTETLRQRLYTRRDDLAEGELPVPLKLIHINKCPV VAPLSVLRPEDQQRLGLDMALYQERALRLSAAQQLWQDKVSGIYAREDFATSLDPEQQLYDGFIGDRDRRLCEQVRAADPAQLAQEQWPFDDERLPELLF RYRARNFPDTLSPEEQERWRIFCQQRLSVPEWGAPNTLESFLTAAAQLTISPTSFQQEVLDEWQIHVQALRKRLNI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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