Pseudomonas umsongensis 20MFCvi1.1, D470_RS0108600
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis 20MFCvi1.1 D470DRAFT_scaffold00003.3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTAACCACGATGCAAAGCATGGCGTCAAGCCCACATAAAATGAGCTTGAACCCCCCGGTTTTATGAGGTTTTTACGGCAACAGGCAGGCTTTCGGAAAAA AACAGCAACAGAATTCCGATTTGTGCACGCTTGTTGCATCAACACCCGTATCGTCTATAAGCGCTCCGCTGGAAGTGGAAGCCTGAAGACCAATAAAAAC AGTGGCAGGGTTGCCCGATGGAGATTCAAGTGCAGGACAAGGGACTCTTTTTTACCGATGCTCAAGCCCTGGAAAACAGCGCTGAAGTTGTCAGTCCGAT TGTGTCGGGATTGTGAATTTGCGACATTGATCAAGCCATTTGCGACAGGGTCGTAAAGAAGCTGAAAGGTTAGATGCGCAAGTATCGCCAATAGGGTCGG CGTGATATAAGTTTGCGCCGACACAAAAAGAAAGAGCCGCCCAGATAATAAAACAGGTGGGACGGCAGTACTCTTCTAAAAACCAAAGGAGCAAATCACG
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| DNA Sequence for Gene |
>D470_RS0108600
ATGCGCGTGATGAAGTGGAGCATGATCGCACTGGCAGTTGCAGCAGCAGCCAGTACTCAATTGGCTACGGCCGCACCTTTCGTAAGTGACCAGGCTGACG CCAAAGGTTTTGTTGAAGATAGCAAGCTCGACTTGCTGGTTCGCAACTACTACTACAACCGTAACAAGAAAGACGGCGCCGTCGATGACAAAGACTGGAC CCAGGGCATCCAGGGCATGTACAGCTCGGGCTACACCCAAGGTCTGATCGGTGTTGGCGTTGAAGCTTGGGGCCAACTGGCCATTAAGCTGGACGGTTCC GACAAGTATTCGGGTACCGGCAACATGCCCGTGGGCAATGATGGCGAAGTCGAAAACAACCAGGGCAAAGCCGGCGCTGCCGCCAAGTTCCGCATCTCCA AGACCGAGCTGAAAATCGGCGACATGCAGCCAAGCACTTCTCCGGTGTTCGCTGTAGGCGGCTCCCGCATCCTTCACCAAACTGCCAGCGGTATCCAACT GCAGAGCAGCGAAGTCAAAGACCTTGACCTCGAAGCCGGTCACTTCTACTCGGCGACCAGTCAGGACCGAAATGCCCGTGATGGCGACCTGTGGGCAACC TACGCTGGCGTGAAAGCCAACTCCATCGACTACTTCGGTGGCAAGTACGGCATTACCCCAGACCTGAGCGTGTCGCTCTACGGTGCCAAGCTCGAAGACA TCTGGAACCAGTACTACGCCAACGCGAACTACACCCTCGCATTGGGTGGCGATCAGTCGATCAACTTCGACGGTAACATCTACAACACCAGGGACACTGG TAGCGCTAAAGCAGGCGAAATCAATAACACCGCCTACTCCCTCGCTGCTGCTTTCTCGTTCCTGAAGGCACACACCATCACCCTGGGCTTCCAGAAAGTG AATGGCGATACTCCGTTCGACTATATCGGCGTGGGTAAAAACAACCGTGGTGGCGACTCGATCTTCCTCGCCAACTCCATCCAGTACTCTGACTTCAACG CCCCTGGCGAGAAATCGGTACAGGCCCGTTACGACCTGAAAATGGCCGAATACGGCATCCCTGGCCTGAGCTTCATGACCCGTTACGTGAAAGGTTGGGA CATTGACGGCACCAACACTCCAGCAGGCAGCCCTTACGCTGGCCTGTACGGTGCAGACGGTAAACACCACGAAACCAACGTGGAAGTTAAATACGTAATT CAGTCCGGCCCAGCTAAAGATCTGTCGTTCCGCATCCGTCAAGCATGGCACACCGCCAACGCAGACGAAGGCGAAGGCGATATCTCTGAGTTCCGCCTGA TCACCGACTACCCGCTCAACATTCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGCAGAAAGTTAGTTCGCGGTAATCAAAAAAAGGCCCATCTTCGGATGGGCCTTTTTTATTGGCTACAGCATTGTTTAAAGGATCGGGGCTTGCAAAAT GTTTGACCAAAAGGTCAGACATCAGTTGATTGACTGTTCCTTACACCGCCGCCGATTCCTGCACCACGCGAATAACCCGCTGCGGAAATGGAATATCGAT GCCGGCAGTCTTCAAGCGATCGCGCGATTGTTCGTTAAACATGAACATCACATTCCAGTAGTCGGCAGTCTTCACCCACACCCGTAGAGAAACAGTGATC GAACTGTCGCCCAGTGTGGAAATCACCGCTTCCGGTGCCGGCTCAGTCAACACTCGCGGATCCTTGGCCAGGTCCAGCAACACTTCACGGGCCTTCTGCA AGTCCGCCTCGTAGTCCACACCCACATCAAATACTACTTTGCGGGTCGGCTGACGGTTGGTGTTGGTGATGATGCCGTTCGACAGATTACCGTTAGGCAC
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| Amino Acid Sequence |
>porin
MRVMKWSMIALAVAAAASTQLATAAPFVSDQADAKGFVEDSKLDLLVRNYYYNRNKKDGAVDDKDWTQGIQGMYSSGYTQGLIGVGVEAWGQLAIKLDGS DKYSGTGNMPVGNDGEVENNQGKAGAAAKFRISKTELKIGDMQPSTSPVFAVGGSRILHQTASGIQLQSSEVKDLDLEAGHFYSATSQDRNARDGDLWAT YAGVKANSIDYFGGKYGITPDLSVSLYGAKLEDIWNQYYANANYTLALGGDQSINFDGNIYNTRDTGSAKAGEINNTAYSLAAAFSFLKAHTITLGFQKV NGDTPFDYIGVGKNNRGGDSIFLANSIQYSDFNAPGEKSVQARYDLKMAEYGIPGLSFMTRYVKGWDIDGTNTPAGSPYAGLYGADGKHHETNVEVKYVI QSGPAKDLSFRIRQAWHTANADEGEGDISEFRLITDYPLNIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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