Pseudomonas umsongensis 20MFCvi1.1, D470_RS0105915
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis 20MFCvi1.1 D470DRAFT_scaffold00002.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGACAACCAAGTCAACCCGAAGACCGGCACCATCCGCGGTCGTGCGGTGTTCGACAACAGAGACGGCAGCTACACCCCGGGTCTTTATGCACGCCTGAA ACTGGTGGGCAGCGGCACCTACTCCGCGGTGTTGATTAACGACGAAGCGGTCGGTACCGACCTGGGTAAAAAGTTCGTGCTGGTGATGGATGCCGACAAC AAAACGGCTTATCGCCCCGTCGAGCTGGGTCCGAAAATCGAAGGTTTGCGCATCGTGCGCAGCGGCCTGAACAAAGACGACACCATCATCGTCAAGGGTT TGCAACGGGTTCGCCCTGGTTCGCCGGTCAGCCCTGAAGTGATCCCGATGGCCAGCAAGGAAACCCTCGCAGCCCTCGCTCAACAACGACAAGCGCTGGA AGCCAGCAACCTGCCCCAAGTCGCACCTGCCAAGGTTGCGCCGGGTACGGTTGTGAAACTGGCTGCTGCGACTCCACGCGGTTAAGGGGCAATTACTCCG
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| DNA Sequence for Gene |
>D470_RS0105915
ATGAATTTCTCCCAATTCTTCATTTCACGGCCGATCTTCGCAGCGGTGCTGTCGCTGCTGATCCTGATCGCCGGTGCCATCTCGCTGTTCCAGTTGCCGA TCAGCGAATACCCGGAAGTGGTACCACCGACCGTGGTGGTCCGTGCCAACTTCCCGGGCGCCAACCCTAAAGTCATCGGTGAAACCGTGGCCGCTCCTCT GGAGCAAGCCATCACTGGCGTCGAGAACATGCTGTACATGTCCTCGCAATCCACCGCTGACGGCAAGATCACCCTGACCATCACCTTCGCCCTGGGCACC GATCTGGACAACGCGCAGGTGCAGGTGCAGAACCGCGTGACCCGGTCCGAGCCCAAGCTTCCCGAGGAAGTGACGCGCATCGGTATCACCGTCGACAAGG CATCGCCCGACCTGACCATGGTTGTGCACTTGACCTCGCCGGACAAACGCTACGACATGCTCTACCTGTCCAACTACGCCTTGCTCAACATCAAGGATGA GCTGGCGCGTCTGGGCGGTGTCGGTGATGTGCAGCTGTTCGGCATGGGCGATTACTCGCTGCGGGTGTGGCTCGATCCGAACAAAACCGCTTCGCGCAAT CTGACCGCCACCGATGTGGTCACCGCGATTCGTGAACAGAACCGTCAAGTGGCGGCCGGTGCCCTGGGTGCTCCGCCTGCACCGAATGCCACGGCATTCC AGCTGTCGGTCAACACCCAAGGCCGTCTGGTGTCTGAGGAAGAGTTCGAGAACATCATCATTCGCTCTGGCGAAAATGGTGAAATCACTCGCCTCAAAGA CATCGCTCGTGTCGAACTCGGCTCCAGCCAATACGCCCTGCGCTCCTTGCTGAACAACCAACCGGCGGTGGCGATCCCGATCTTCCAGCGCCCAGGCTCC AACGCGATCCAGATCTCCAACGACGTTCGGGCGAAAATGGCCGAGCTGAAAAAGAACTTCCCGGAAGGCATGGACTTCAGCATCGTCTATGACCCGACGA TCTTCGTGCGCGGTTCCATCGAGGCGGTGGTTCACACCCTCTTCGAAGCACTGATCCTGGTTGTGCTGGTGGTGATCCTCTTCCTGCAAACCTGGCGCGC CTCGATCATCCCGTTGGTGGCGGTGCCGGTTTCGCTGATCGGTACGTTTGCCGTGATGCACCTGTTCGGCTTCTCGCTGAACGCCCTGTCGCTGTTCGGA CTGGTATTGGCCATCGGTATCGTGGTCGACGATGCGATCGTGGTGGTGGAGAACGTCGAGCGAAACATCGGGCTCGGACTCACTCCGGTAGAAGCCACCA AGCGTGCGATGCGTGAAGTGACCGGTCCGATCATCGCGACGGCGCTGGTGCTGTGTGCGGTGTTTATCCCGGCCGCGTTCATCTCCGGCTTGACCGGTCA GTTCTACAAACAGTTCGCCCTGACGATTGCGATTTCGACCGTGATCTCGGCCTTCAACTCGCTGACCTTGTCGCCAGCACTGGCCGCTGTGTTGCTCAAG AGCCATGACGCGCCGAAGGACCGCTTCTCCAAGGTGCTGGACAAGATCTTCGGTGGCTGGTTGTTCCGTCCGTTCAACCGTTTCTTTGACAAGGCCAGCC ATGGCTATGTCGGCACCGTGGGCCGGGTAATCCGCAGCAGCGGTATCGCCCTGCTGCTGTACGCCGGCTTGATGGTGCTGACCTTCTTCGGTTTCTCCAA TACGCCGACCGGTTTCGTACCTGGCCAGGACAAGCAATACCTGGTGGCGTTCGCGCAACTGCCGGATGCCGCGAGCCTGGACCGTACCGAAGACGTGATC AAGCGCATGTCCGACCTGGCCCTGAAACAGCCTGGCGTGGAAAGCGCGGTGGCCTTCCCCGGCCTGTCGATCAACGGTTTCACCAACAGCCCTAACGCCG GCATCGTGTTCGTCACCCTGAAGCCTTTCGACGAGCGTAAAGACCCGAGCATGTCCGCCGGTGCGATTGCCGGTGCGTTGAACGGCCAGTACGCCGGGAT TCAGGAAGCCTACATGGCGATCTTCCCGCCACCGCCGGTACAAGGCCTGGGGACCATTGGCGGTTTCCGCCTGCAGATCGAAGACCGGGGCAACCTGGGC TATGACGAGCTGTACAAAGAAACCATGAACATCATCGCCAAGAGCCGCAGCGTGCCGGAACTGGCCGGTCTGTTCACCAGTTACACCGTGAACGTGCCGC AGGTCGATGCTGCTATCGACCGGGAAAAAGCCAAGACTCACGGCGTGGCCGTCAGCGACATCTTCGACACCCTGCAGATCTACCTGGGTTCGTTGTATGC CAACGACTTCAACCGCTTCGGTCGCACCTATCAGGTCAACGTTCAGGCTGAGCAACAGTTCCGCCTCGAATCGGACCAGATCGGTCAGCTGAAAGTGCGT AACAACCGAGGCGAGATGATCCCGTTGGCGACCTTCATCAAGGTCAGCGACACCTCCGGGCCAGACCGCGTAATGCACTACAACGGCTTCATCACCGCTG AAATCAACGGTGCGGCAGCCCCAGGCTACAGCTCCGGCCAGGCCGAGAAAGCCATCGAGAAATTGCTCAAGGATGAACTTCCGAACGGCATGACCTACGA GTGGACCGACCTGACCTACCAGCAGATTTTGTCCGGCAACACTGCGCTGTTCGTGTTCCCGCTCTGCGTACTGCTGGCGTTCCTGGTGCTCGCGGCTCAA TACGAAAGCTGGAGCCTGCCACTGGCGGTGATCCTGATCGTACCGATGACTCTGCTGTCGGCCATTACCGGGGTGATTGCCTCGGGCGGCGACAACAACA TCTTTACCCAGATCGGCTTGATCGTACTGGTGGGACTTGCGTGTAAGAACGCGATTCTGATCGTCGAGTTTGCCAAGGATAAACAGGAAGAAGGCCTCGG CCCGCTGGCAGCGGTACTGGAAGCTTGCCGTCTGCGTCTGCGGCCGATCCTGATGACCTCCTTCGCGTTCATCATGGGTGTTGTGCCACTGGTTTTCTCC AGCGGTGCGGGTGCCGAAATGCGTCATGCCATGGGTGTGGCGGTGTTCTCCGGGATGCTCGGGGTGACCTTCTTCGGTCTGTTGCTGACGCCGGTGTTCT ACGTACTGATTCGCAACTTTGTGGAGCGCGGTGAGCAACGCAAAGCGGCCAAGGCACTGAAATTGGAAAAGCAACTGGAGGCGCAACAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCTGAAAGCCTTCCTGCCGAGCCTGCTGGTACTGGCGCTGAGCGCCTGTGCCGTCGGCCCGGACTATAAAACCCCAGCCACCGAGGCGGCCAACATCAC GGCCGCCAACGATGGCAGCGCCGGTCAGAAGAACTTTGACCGCGCCCGTTTCGAAGGCATCTGGTGGCAGCAATTCGACGATCCGACCCTCAACCAGTTG GTGAAGCAATCCTTGCAGGGCAACCGTGATTTGCGTGTGGCTTTTGCCCGCTGGAAAGCGGCCCGAGCGATTCGCGATGACGCCAGCAATGACGCCATGC CGACCATCACCAGCCGCGCGAGCAGCGATCTGGGCAAAGGGCAGATTCCGGGTCAGACCACCAAACGGGTCAACAGCGAACGCTATGACCTGGGCCTGGA CATGGCCTGGGAACTGGACTTGTTCGGTCGCATCCAGCGCAACCTGGAATCCAGCGACGCTGAGCAGCAAGCGGCCGAAGCCGATCTTTACCAACTGCAA
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| Amino Acid Sequence |
>transporter
MNFSQFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVAAPLEQAITGVENMLYMSSQSTADGKITLTITFALGT DLDNAQVQVQNRVTRSEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYALLNIKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTATDVVTAIREQNRQVAAGALGAPPAPNATAFQLSVNTQGRLVSEEEFENIIIRSGENGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS NAIQISNDVRAKMAELKKNFPEGMDFSIVYDPTIFVRGSIEAVVHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIGLGLTPVEATKRAMREVTGPIIATALVLCAVFIPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK SHDAPKDRFSKVLDKIFGGWLFRPFNRFFDKASHGYVGTVGRVIRSSGIALLLYAGLMVLTFFGFSNTPTGFVPGQDKQYLVAFAQLPDAASLDRTEDVI KRMSDLALKQPGVESAVAFPGLSINGFTNSPNAGIVFVTLKPFDERKDPSMSAGAIAGALNGQYAGIQEAYMAIFPPPPVQGLGTIGGFRLQIEDRGNLG YDELYKETMNIIAKSRSVPELAGLFTSYTVNVPQVDAAIDREKAKTHGVAVSDIFDTLQIYLGSLYANDFNRFGRTYQVNVQAEQQFRLESDQIGQLKVR NNRGEMIPLATFIKVSDTSGPDRVMHYNGFITAEINGAAAPGYSSGQAEKAIEKLLKDELPNGMTYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAITGVIASGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQEEGLGPLAAVLEACRLRLRPILMTSFAFIMGVVPLVFS SGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRNFVERGEQRKAAKALKLEKQLEAQQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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