Strain | Pseudomonas umsongensis 20MFCvi1.1 D470DRAFT_scaffold00002.2, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
AGACCAGCAATAAGGGAACGCTGTGCGACTGCGACTGATCGCCGTCGGTTCACGCATGCCCAAGTGGGTGGAAGAAGGCTGGCATGAATATGCCAAGCGT CTTCCTTCCGAGCTGGCGCTGGAACTGGTGGAAATTCCGCTCAACACCCGCGGCAAGAACGCTGACGTGGCGCGCTTTATCCGTCAGGAAGGCGAAGCCA TGCTGGCCAAGGTCGGGCCGAACGAGCGCGTTGTCACCCTCGAAGTCCACGGCAAGCCCTGGAGCACCGAGCAACTGGCGGTCGAACTCGATCGCTGGCG GCTGGACTCGCGCACGGTGAATTTCATGGTCGGCGGCCCCGAGGGGCTGGCGCCGGAAGTCTGTGCCCGGGCGGATCAACGTTGGTCGTTGTCGCCGTTG ACGTTGCCGCACCCGCTGGTGCGGATTCTGATCGGCGAACAGCTGTATCGTGCCTGGACAGTGCTGTCCGGCCACCCTTACCACAAGTAGTTCTGCCCTC
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DNA Sequence for Gene |
>D470_RS0104445
ATGTCCCAGCCGATCCGCATCAAGGACCACGAAAAAGACGCCCGTCTGGTGCGTGGCCGCGTCGTGTTCGGGGCTATTGCGGTAGTGACGCTGATAGGCG TGCTGATCGCGCGGCTGTATTTCCTGCAGGTGATCCAGTACGAGTACCACTCGACCCTGTCGGAAAACAACCGCGTCCATGTGCAGCCGATTCCGCCGAC TCGCGGACTGATCTACGACCGCAATGGCGTGGTGGTGGCCGATAACCGGCCCAGCTTCAGCCTGAGCATGACTCGCGAACGCTCCGGCGACTGGCAGCAA GTGCTCGATGTGATCGTCGAAGTGCTTGAGCTGACGCCCGAGGACCGGGTGATCTTCGAGAAGCGTATGCGTCAGGGGCGTCGGCCGTTCGAGCCGGTGC CGATCCTGTTCGAGCTGACCGAAGAGCAGATCGCCCGCATCGCGGTGAACCAGTTCCGTCTGCCGGGTGTGGAAGTGGTCGCACAGCTGGTTCGTCACTA TCCGCAGGGCGCGCACTTTGCGCACTCAGTGGGATATATGGGGCGGATCAACGAGAAAGAGCTCAAGTCTCTGGACCCGGTGAGTTACAGCGGCACCCAT CAAATTGGCAAAACCGGCATCGAGCGCTTCTACGAGCCCGAATTGCACGGTCAGGTTGGTTACGAAGAAGTCGAGACTAACGCCCGTGGCCGCGTGCTGC GGGTACTCAAGCGTACCGAACCGATTTCCGGCAAGGACATCGTCCTGAGCCTGGACATCAAATTGCAGGAAGCCGCCGAAGCCGCACTTGGCGGTCGCCG TGGCGCGGTCGTGGCGCTGGATCCGGCGACCGGCGAAGTGCTGGCGATGGTCAGCCAGCCGAGTTTCGACCCGAACCTGTTCGTCACCGGCATCAGTTTC AAAGCTTACTCCGAGCTGCGTGACTCCATCGACCGGCCACTGTTCAACCGCGTGCTGCGCGGTCTGTACCCGCCGGGCTCGACCATCAAGCCGGCGGTGG CGATTGCCGGCCTGGATGCGGGCGTGGTCACGGCGTCGACCCGGGTGTTCGACCCGGGCTACTACATGCTGCCCAACTACGATCACAAGTACCGCAACTG GAACCGTACCGGTGACGGCTTTGTCGATCTAGACACGGCGATCATGCGTTCCAACGACACCTACTTCTATGACCTGGCGCACAAGCTGGGGATTGATCGG TTGTCGTCCTACCTGAGCAAATTCGGCATTGGCCAGAAGGTCTCCCTGGACATGTTCGAAGAGTCGCCGGGGCTGATGCCGACACGGGAATGGAAGCGCG TGACCCGTCGTCAGGCCTGGTTCCCGGGCGAGACGCTGATTCTGGGGATCGGGCAGGGCTATATGCAGTCCACTCCGTTGCAACTGGCGCAGGCCACGGC ACTGGTGGCCAACAAGGGTGTCTGGAATCGTCCGCACCTGGCCAAGACCATCGAGGGCGAGAAGCCGAAGGATGAAAATCCGATGCCGGACATTATCCTG CGCGACCCTTCGGACTGGACCAAGGTCAATCACGGCATGCAACAGGTGATGCACGGTGCCCGGGGTACGGCGCGCAAGGCATCGATCGGCGCGCAATACC GGATCGCCGGCAAAAGTGGTACGGCCCAGGTGGTCGCGATCAAACAGGGCGAGAAGTACGACCGCTCCAAGGTGCAGGAGCGCCACCGCGACCACGCCTT GTTCGTCGGCTTCGCGCCGGCCGACAACCCGAAAATCGTGGTGTCGGTGATGGTCGAGAACGGCGAGTCCGGCTCCGGCGTCGCCGCTCCGGTGGTGCGT CAAGTGATGGACGCCTGGCTCCTCGACCAGGACGGCCGACTGAAAGCCGAATACGCCAGCCCTATCAGTGCGGAGGCTACGGCCCGTGAAGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TTTCGATCGCATGCTCTCCAGCGAGGATGTGATGCGTCGCCGTGCGACGCTGTTGCAACGCCTGCACATCGACGGCCCGCTGCTGATCCTGCTGCTGACC CTCGCCGCCGGCAGCCTGTTCGTGCTGTATTCGGCCAGCGGCAAGAGCTGGGATCTGCTGGCCAAGCAAGCCACTTCCTTCGGCATCGGCCTGGTATCGA TGATCGTCATCGCCCAGTTCGAACCGCGCTTCATGGCCCGCTGGGTGCCGCTCGGCTATGTGGTCGGCGTGATCTTGCTGGTGGTGGTGGACGTCATGGG CCATAACGCCATGGGGGCCACCCGCTGGATCAATATCCCCGGGGTGATCCGCTTCCAGCCCTCGGAATTCATGAAGATCCTGATGCCGGCGACCATCGCC TGGTACCTGGCCAAGCGTTCCTTGCCACCCCAGCTCAAGCACGTGGGGATCAGTCTGGTGCTGATCGGTGTCCCGTTCATTCTGATCGTGCGTCAGCCCG
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Amino Acid Sequence |
>penicillin-binding protein 2
MSQPIRIKDHEKDARLVRGRVVFGAIAVVTLIGVLIARLYFLQVIQYEYHSTLSENNRVHVQPIPPTRGLIYDRNGVVVADNRPSFSLSMTRERSGDWQQ VLDVIVEVLELTPEDRVIFEKRMRQGRRPFEPVPILFELTEEQIARIAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYMGRINEKELKSLDPVSYSGTH QIGKTGIERFYEPELHGQVGYEEVETNARGRVLRVLKRTEPISGKDIVLSLDIKLQEAAEAALGGRRGAVVALDPATGEVLAMVSQPSFDPNLFVTGISF KAYSELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDAGVVTASTRVFDPGYYMLPNYDHKYRNWNRTGDGFVDLDTAIMRSNDTYFYDLAHKLGIDR LSSYLSKFGIGQKVSLDMFEESPGLMPTREWKRVTRRQAWFPGETLILGIGQGYMQSTPLQLAQATALVANKGVWNRPHLAKTIEGEKPKDENPMPDIIL RDPSDWTKVNHGMQQVMHGARGTARKASIGAQYRIAGKSGTAQVVAIKQGEKYDRSKVQERHRDHALFVGFAPADNPKIVVSVMVENGESGSGVAAPVVR QVMDAWLLDQDGRLKAEYASPISAEATAREE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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