Pseudomonas mandelii 36MFCvi1.1, F626_RS0118590

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00091 pas_2 IPR000014 PAS domain 453 523 0.1
Gene3D G3DSA:3.30.450.20 PAS domain - - 463 577 1.1E-15
CDD cd01948 EAL IPR001633 EAL domain 1028 1266 3.33713E-117
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1023 1277 6.5E-102
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 571 712 1.48E-15
CDD cd00130 PAS IPR000014 PAS domain 595 711 0.00469393
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 726 842 1.0E-17
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 284 439 2.39E-6
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 844 1010 4.7E-40
SMART SM00052 duf2_2 IPR001633 EAL domain 1022 1268 8.4E-127
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1022 1278 2.6E-107
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 852 1013 1.57E-49
SMART SM00086 pac_2 IPR001610 PAC motif 794 836 3.0E-5
SMART SM00091 pas_2 IPR000014 PAS domain 586 652 2.5
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 847 1008 3.6E-50
CDD cd00130 PAS IPR000014 PAS domain 731 833 5.93422E-11
CDD cd01949 GGDEF IPR000160 GGDEF domain 848 1010 1.63174E-62
SMART SM00086 pac_2 IPR001610 PAC motif 400 441 210.0
Gene3D G3DSA:3.30.450.20 PAS domain - - 584 724 4.0E-19
SMART SM00086 pac_2 IPR001610 PAC motif 531 574 5.2E-7
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 722 1271 0.0
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 438 572 1.92E-14
CDD cd00130 PAS IPR000014 PAS domain 475 571 4.41262E-5
Pfam PF13426 PAS domain IPR000014 PAS domain 598 713 9.7E-6
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1027 1274 3.92E-93
SMART SM00086 pac_2 IPR001610 PAC motif 672 714 7.3E-4
SMART SM00091 pas_2 IPR000014 PAS domain 722 788 1.8E-6
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 450 581 2.4E-10
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 849 1018 5.0E-61
Pfam PF13426 PAS domain IPR000014 PAS domain 734 835 4.6E-15
Pfam PF00563 EAL domain IPR001633 EAL domain 1028 1263 2.7E-76
Gene3D G3DSA:3.30.450.20 PAS domain - - 725 848 1.7E-28
Gene3D G3DSA:3.30.450.20 PAS domain - - 282 446 1.0E-6
Pfam PF08447 PAS fold IPR013655 PAS fold-3 477 568 2.1E-10
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 734 844 8.86E-23
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 842 1014 6.4E-45
SMART SM00267 duf1_3 IPR000160 GGDEF domain 836 1012 9.0E-68
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 582 721 4.8E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.