Pseudomonas mandelii 36MFCvi1.1, F626_RS0118300
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mandelii 36MFCvi1.1 F626DRAFT_scaffold00005.5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGTCGCGGCCTACACGCCTGTTCCCTCTTTCACACACAATTTACGCACAGGTTTATCCACAGGTAGCACGTTGCAACACCCTCCAAAACGCATTATCTT GTACCTCGGCGCAAAAAAAACCCTACATGTAGGGTTTTACGCCAAAAACCAAACACAAACCGGACACCGATTTCAAGCGCTTTTATTGCCTCTTTCCGGT TGAACCAAACGTATTTTCGAAAGACCAAACCGCGCGTGCGGATGGCTACTGTTTTTAAGCCCGAAACGGCGATAACGGTACGGGTGTTGCAGTCATTTAC TGCCGCCCAAAACGGAATTCGGTTTCAGGCCTAAGGCGTGACACCAAAGACTTCGGCATGGAAGCGGCGCCCGATAGCCCCTTCCTGATCTGTCCCGAAG TTGGTATGCCCGGCCCCCGCCGGTTGTAGTGCTTCAGGACAGAACGGTGGGCACCGTGATGGTGCCCAAACAAACATAGAGAATGTGGAGATACCCCCCC
|
|
| DNA Sequence for Gene |
>F626_RS0118300
ATGCAAACCGACACAACTCGCGAGAACCCGCAGGGCACCTTGCCGCAGGCCACCGATTCGAATTCGGATCTGTCCGCCACCGCGCCTGGCCAACTGCGCG TGATCAAGCGTAACGGCACTGTCGTCCCTTACACCGATGACAAGATCACCGTCGCCATCACCAAAGCGTTTCTCGCAGTTGAGGGCGGCACTGCTGCCGC TTCGTCGCGAATCCACGACACCGTTGCCCGCCTGACCGAACAAGTCACCGCGACTTTCAAGCGTCGCATGCCTTCGGGCGGCACCATCCACATCGAAGAA ATCCAGGACCAGGTCGAACTGGCCCTGATGCGTGCCGGCGAGCAGAAAGTCGCCCGCGACTATGTGATCTACCGTGACTCCCGCGCCAAAGAGCGCGCAG CGCACTCCCCTGCCGAAGAAGCCGTCAACGCTCACCCATCGATCCGCATCACCCGCGCCGATGGCAGCCTCGCACCGCTGGACATGGGTCGTCTGAACAC CATCGTTACCGAAGCGTGCGAAGGCCTGGAAGAAGTCGACGGCGAGCTGATCCAGCGCGAAACCCTGAAAAACCTGTACGACGGCGTGGCCCTGACCGAC GTCAACACCGCTCTGGTGATGACCGCCCGTACGCTGGTCGAGCGTGAGCCGAACTACTCGTTCGTGACCGCCCGCCTGCTGATGGACACCCTGCGTGCCG AAGGCCTGGGCTTCCTGGGCGTCGCCGACAGCGCGACCCACCACGAAATGGTCGACCTGTACGCCAAGGCACTGCCGGCATACATCGCCAAAGGTATCGA ATACGAATTGCTGAACCCGGTTCTGGCGTCCTTCGACCTGGAAAAACTCGGCAAGGCGATCAACCACGAGCGCGATCAGCAGTTCACCTACCTGGGCCTG CAGACCCTGTACGACCGTTACTTCATCCACAAGGACGGTATCCGCTTCGAACTGCCACAGATTTTCTTCATGCGCGTGGCCATGGGCCTGGCGATCGAAG AGAAGCAGAAAGAAGACCGTGCGATCGAGTTCTACAACCTGTTGTCGTCCTTCGACTACATGTCCTCGACCCCGACCCTGTTCAACGCCGGTACCCTGCG TCCACAGCTGTCGAGCTGCTACCTGACCACCGTGCCGGATGACCTGTCGGGCATCTACCACGCGATCCACGACAACGCCATGTTGTCGAAATTCGCAGGC GGCCTGGGCAACGACTGGACCCCGGTTCGGGCGCTGGGTTCGTACATCAAGGGCACCAACGGCAAATCCCAGGGCGTCGTGCCGTTCCTGAAAGTGGTGA ACGACACCGCCGTCGCCGTTAACCAGGGTGGCAAGCGCAAAGGCGCTGTCTGTGCCTACCTGGAAACCTGGCACATGGACATCGAAGAGTTCATCGAACT GCGCAAGAACACCGGTGATGACCGTCGTCGTACCCACGACATGAACACCGCCAACTGGATCCCTGACCTGTTCATGAAGCGTGTCTTCGATGACGGCAAG TGGACCCTGTTCTCGCCGTCCGAAGTACCGGACCTGCACGACCTGACCGGCAAGGCCTTCGAAGAGCGTTACGAGTACTACGAAGCCCTGACCGAGTACC CGGGCAAGGTCAAGCTGTTCAAGACCATCCAGGCCAAAGACCTGTGGCGCAAAATGCTGTCCATGCTGTTTGAAACCGGCCACCCATGGCTGACCTTCAA AGACCCGTGCAACCTGCGCAGCCCGCAGCAGCACGTGGGCGTGGTCCACAGCTCGAACCTGTGCACCGAGATCACCTTGAACACCAACAAGGACGAGATC GCCGTTTGCAACCTGGGCTCGATCAACCTGCCGAACCACATCGTCGACGGCAAGCTGGACACCGCCAAGCTGCAACACACCGTGAACACCGCCGTGCGCA TGCTCGATAACGTGATCGACATCAACTACTACTCGGTGCCGCAAGCGAAGAACTCCAACTTCAAGCACCGTCCGGTCGGTCTGGGCATCATGGGCTTCCA GGACGCTCTGTACCTGCAGCACATCCCTTACGGTTCCGACGCTGCCGTCGAATTCGCCGACAAGTCGATGGAAGCGGTCAGCTACTACGCGATCCAGGCT TCCTGCGACCTGGCTGACGAGCGTGGCGCCTACGAGACGTTCCAGGGTTCGCTGTGGTCCAAAGGCATTCTGCCGCTGGATTCGCAACAGATCCTGATCG AGCAGCGTGGCCAGAAGTACATCGACGTTGACCTGAACGAAACCCTGGACTGGGCACCGGTTCGCGCCCGTGTGCAGAAAGGCATTCGTAACTCCAACAT CATGGCCATCGCACCGACCGCAACCATCGCCAACATCACCGGCGTGTCGCAGTCGATCGAACCGACCTACCAGAACCTCTATGTGAAATCGAACCTGTCG GGCGAATTCACCGTGATCAACCCGTACCTGGTTCGCGACCTGAAGGCTCGCGGCCTGTGGGACTCGGTCATGATCAACGACCTGAAGTACTACGACGGTT CGGTGCAGCAGATCGAGCGCATCCCGCAAGAACTCAAAGAGCTCTACGCGACTGCCTTCGAAGTGGACACCAAGTGGATCGTCGACGCCGCCAGCCGTCG TCAGAAGTGGATCGACCAGGCTCAGTCGCTGAACCTGTACATCGCCGGCGCTTCGGGCAAGAAGCTGGACGTGACCTACCGCATGGCTTGGTACCGTGGC CTGAAAACCACCTACTACCTCCGTGCCCTGGCCGCGACCAGCACCGAGAAGTCGACCATCAACACCGGTAAGCTGAACGCTGTTTCCAGCGGCGGCAACC ACGGTGACGACTCGGTCCTGGTAGCCCCAGCCGGTCCAGCTCCAGTGCCGAAGGCTTGCGCCATCGACGAGCCGGATTGCGAAGCTTGCCAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCTGAGCCGGTAGGCGCTGAAAGGCGCTTACCTGAACCCCCCGATGAGCCTCTGGCTGGTCGGGGGTTTTCTTTTGCCTGCTTTTAAGGTCAGAAGATCG CAGCCTTCGGCAGCTCCTATACCGATATTGCATACATCTGTAGGAGCTGCCGAAGGCTGCGATCTTTTGATCTACCCTGCCTGGAGAAATCCACGGCAAA AAAAACGGCAAAACCTGAAACGCAGGTCTTGCCGTTTGTGTTTTACAACCGCAGCCTCCATCGACATCCGGTGGAGGCTGTCACCGGGTTAAACCGGTAT GGTGAAAGAGTCTCCGTTGTTGGTAATGAACGTCTCGATGGTGTTGGCCCCGGCATACCAGTCCTTCAGGAACACCCCGGAGTCCAGATTGCCGCTGGAC AGGTCGGCGGCATTGAAAATGTAGGCACCCAGGTCGTTCTTGACCACCCGGACATCGCTGAGGCTCTGGATGTTTTTCAGGGTGACGGTGTCCACACCGG
|
|
| Amino Acid Sequence |
>ribonucleotide-diphosphate reductase subunit alpha
MQTDTTRENPQGTLPQATDSNSDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEE IQDQVELALMRAGEQKVARDYVIYRDSRAKERAAHSPAEEAVNAHPSIRITRADGSLAPLDMGRLNTIVTEACEGLEEVDGELIQRETLKNLYDGVALTD VNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMVDLYAKALPAYIAKGIEYELLNPVLASFDLEKLGKAINHERDQQFTYLGL QTLYDRYFIHKDGIRFELPQIFFMRVAMGLAIEEKQKEDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAG GLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGK WTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEI AVCNLGSINLPNHIVDGKLDTAKLQHTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQA SCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDVDLNETLDWAPVRARVQKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLS GEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRG LKTTYYLRALAATSTEKSTINTGKLNAVSSGGNHGDDSVLVAPAGPAPVPKACAIDEPDCEACQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|