Pseudomonas mandelii 36MFCvi1.1, F626_RS0116030
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mandelii 36MFCvi1.1 F626DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTAGTGGTTGTTGAGTTCCAGCTCGATCTGCACCTCGGGGTACTGCCGGGAAAATTCCAGCAGTGCGCCATCAAAGAACGTTTCCCCCAATGAAACCGG CACCGTCATCCGCACCGGGCCGGCCATGTCGTCTTTCAGCCGTGCCAATGCCTGACGCGCACGCTCCACCTGCACCACCAGCGCCTGGGCTTGCGGCAAC AACGCCGCACCCGCCGCCGTCAGGCTCAAGCGCCGAGTGGTGCGTTGCAGCAACACCACGCCAAAGCGCGTTTCCAGCAGGCTGATGCGCTTGGAGAGTT GCCCCTTGCTGCAACCCAGTTGCTGGGCGGCCAGGGTGAAACTGCCCGCTTCGATCAACACCGCGAACGCCGCCAGATCGTCCATTTCGCTCATGGATTG TTTCCATTTGAAAACCAAAGGTTGCCCATTAGCACGCTTATTAATAAAAAAAACCACACTAGACTTAACTTTAAATCCAACCCACTTAAGGAACTGCACG
|
|
| DNA Sequence for Gene |
>F626_RS0116030
ATGAAAATTCTGTTGATTGGCGCCTCCGGCACCGTCGGTTCGGCCATTGACCATGAACTGTCCCAGCGCCACAAAATCATCCGTATCGGCCGTAAAAGCG GGGATTTCCAGGTCGACATCAGTGACAGCGACTCGATCCGCAAACTGTTCGAACAGACCGGCAACTTCGATGCGTTGATCTGCGCCGCCGGCAGCGTCAA CTTCGTGCCGCTGGCCACCATGACCGCACAGGACTTCGAACTGGGCTTGCGAGACAAGCTGATGGGCCAGGTCAACCTGCTGCTGATCGGCCGGGAATTC GCCAATGACGGTGCGTCTTTCACCTTCACCACCGGCATCCTCAGCCACGATCCGATTCGTACCGGCAGCTCCGCGGCCCTGGTCAACGGTGCCCTCGACG CCTTCGTCCGTGCGGCGGCGATCGAACTGCCGCGAGGCCTGCGTATCAACTCGGTCAGCCCGAACGTACTGGTCGAAGCCATGGGCAGCTATGCGCCGTA CTTCCGTGGTTTCAAACCGGTTCCCGCCGCCGACGTGGCATTGGCCTACGCCAAAAGTGTGGAAGGCCTGCAGACCGGTCAGACCTATCGCGTCGGTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACCAGACTTGCCCACAGGAAAGCGAGAACATTGCAGGGTTGTGATGAACGGTCAGGCTGAGTAACGTGGCGACACTTGTCTGGAGACTCAAAGATGCGTG TTGCCCGTTCCCTGGTACTTGTTGCCCTGCTTCCGTTGTTCGCCGCTTGCCAACTGCTCGATGGCCCACGGCAGAGCGCCTCCCATGTGGGCCAGACCCG CATGCAGGGCCAATTGACGGCGGCCGACGGCAAGCTGCTGTTCCAGCCGTGTAATGAACAGCGCAGTTTTGTGGTCAATGACACCGGGGGCACCAGCATC CTGCAAGAGGCTGCGACCCTGGCTGACGAACAGGGCAAGTTGTTTGCCGACGTGCGCGGCCGGATCGTTGCCAGTGGCGCCGACAGCCAGCTCGACCTCA CACAGTTGTACCGCGTCGAGCGTTCGGGCACCGCCTGCGACGATCCCAATTTCAAACAGCTGATCCTGCGCGCCGCCGGCCATGGCCCGGAGTGGAGCGT
|
|
| Amino Acid Sequence |
>short-chain dehydrogenase
MKILLIGASGTVGSAIDHELSQRHKIIRIGRKSGDFQVDISDSDSIRKLFEQTGNFDALICAAGSVNFVPLATMTAQDFELGLRDKLMGQVNLLLIGREF ANDGASFTFTTGILSHDPIRTGSSAALVNGALDAFVRAAAIELPRGLRINSVSPNVLVEAMGSYAPYFRGFKPVPAADVALAYAKSVEGLQTGQTYRVG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|