Pseudomonas mandelii 36MFCvi1.1, F626_RS0115805
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mandelii 36MFCvi1.1 F626DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGCGACAATGCCGCCGCGGTCAAGCTGACCCTGGAAGACGGCAGCCAGTACGCCGTGGACGGCAAGCTCGAGTTCTCTGAAGTCTCGGTAGACCAGAC CACCGGTTCCGTGACTTTGCGCGCGGTGTTCCCGAACCCTGATCACACCCTGCTGCCGGGCATGTTCGTTCACGCTCAGTTGCAATCCGGGGTGAATAGC GCGGCGATTCTCGCTCCGCAACAAGGTGTGACCCGCGACCTCAAAGGCACCCCGACCGCGCTGGTCGTGGGTCCAGACAACAAGGTCGAACTGCGCCAGC TCAAGGCCAGCCGTACTGTCGGCAACCAATGGTTGATTGAAGACGGCTTGAAGGCAGGCGATCGCCTGATCACTGAAGGGCTGCAATTCGTCAGACCTGG TGTTGAAGTCAAGGCCACTGAAGCCACCAACGTCAATGCCAAGAGCCCGGTCCCCGCACAGGCAGCCAAAGTCGCTGTCGGCGGCAAAGGGGAGTAAACC
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| DNA Sequence for Gene |
>F626_RS0115805
ATGTCGAAATTTTTTATCGACCGTCCGATTTTCGCCTGGGTAATTGCCCTGGTGATCATGCTGGTCGGGGCTTTATCGATCCTCAAGCTGCCCATCAACC AATACCCGAGCATTGCGCCTCCGGCCATTGCGATCTCCGTGACTTACCCTGGCGCGTCTGCACAAACCGTGCAGGACACCGTGGTGCAGGTGATCGAGCA ACAGCTCAACGGTATCGACAACCTGCGTTATGTCTCGTCGGAAAGTAACTCCGACGGCAGCATGACCATTACCGCGACCTTCGAGCAGGGCACCAGCTCC GATACCGCGCAGGTTCAGGTCCAGAACAAACTGAACCTGGCCACCCCGCTGCTGCCGCAAGAAGTGCAGCAGCAGGGTATCCGCGTGACCAAGTCGGTGA AAAACTTCCTGATGGTCATCGGTGTGGTGTCGCGTGACGGCAGCATGACCAAGGACGACCTGTCCAACTACATCGTGTCGAACATGCAGGACCCGATCTC GCGGACCGCCGGTGTCGGTGACTTCCAGGTCTTCGGTGCCCAGTACGCGATGCGGATCTGGCTCGATCCGGCCAAGTTGAACAACTTCAACCTGACCCCG GTGGACGTGAAAACCGCCATCGCGGCGCAGAACGTCCAGGTCTCGTCCGGTCAACTCGGCGGCTTGCCCGCCCTGCCCGGCCAGCAACTGAACGCTACGA TCATCGGCAAGACCCGTCTGCAGACCGCCGAGCAGTTCAAGGAAATCCTGCTCAAGGTCAACAAGGACGGCTCGCAGGTTCGCCTCAAAGACGTCGCCGA AGTAGGCCTGGGTGGCGAGAACTACAGCGTCAGCGCCCAGTTCAACGGCAGCCCGGCTTCCGGTCTGGCAGTAAAGCTGGCCAACGGTGCCAACGCCCTC GACACCGCAAAAGCCTTGCGCAAAACCATCAACGACCTGAAGCCGTTCTTCCCGCAAGGGATGGAAGTGGTGTTCCCGTACGACACCACTCCGGTGGTGA CCGAGTCGATCAAAGGTGTGGTTGAAACCCTGGTCGAAGCGATCGTGCTGGTGTTCCTGGTGATGTTCCTGTTCCTGCAGAACTTCCGCGCCACCGTCAT CACCACGATGACCGTGCCGGTGGTATTGCTGGGTACATTCGGGATCCTCGCGGCATTTGGCTTCAGCATCAACACCCTGACCATGTTCGGCATGGTGCTG GCCATCGGCTTGCTGGTGGACGACGCCATCGTCGTGGTGGAAAACGTCGAACGGGTCATGAGCGAAGAAGGCCTGTCACCCAAGGAGGCCACCAAGAAAT CCATGGGGCAGATCCAGGGTGCGCTGGTCGGTATTGCCCTGGTGTTGTCGGCGGTACTGCTGCCGATGGCGTTCTTCAGTGGCTCCACCGGTGTGATCTA CAAGCAGTTCTCGATCACCATCGTTTCGGCCATGGCCTTGTCGGTGCTGGTTGCATTGATCTTCACCCCGGCGCTTTGCGCCACCATGCTCAAGGCGATT CCGAAAGGCGAGCACGGCACGCCGAAACGCGGCTTCTTCGGCTGGTTCAACCGCAACTTCGACCGTGGCGTCAAAAGCTACGAGCGCGGCGTCGGCAACA TGCTCGCGTACAAGGCTCCGTACCTGCTGGCGTACCTGATCATCGTGGTCGGCATGATCTGGCTGTTCACCCGCATTCCAACGGCGTTCCTGCCGGAAGA AGACCAGGGCGTACTGTTTGCCCAGGTGCAAACCCCGGCCGGTTCCAGCTCCCAGCGCACGCAAGTGGTCGTGGATGAAATGCGCGAGTTCCTGCTGCGG CCGAGCAAGGATGGCGGCGAAGGCGATGCGGTGGCCTCGGTGTTTACCGTGACCGGCTTCAACTTCGCCGGCCGTGGCCAGAGTTCGGGCATGGCGTTCA TCATGCTCAAACCGTGGGACGAACGTAACGCCGACAACAGCGTGTTCAAACTGGCGGCCCGTGCCCAACAGCACTTCTTTACTTTCCGCGACGCCATGGT GTTTGCCTTCGCGCCACCGGCGGTACTGGAACTGGGTAACGCCACCGGTTTCGACGTGTTCCTTCAGGACCGCGCCGGTATCGGTCACAACAAGCTGATG GAAGCCCGCAACCAGTTCCTCGGCATGGCGGCGCAAAGCAAGGTCCTGTCGCAAGTCCGTCCGAACGGCCTGAACGACGAGCCGCAGTACCAGCTGGAAA TCGACGATGAGAAGGCCAGCGCCCTGGGCGTGACCCTCACTGACATCAACAACACCCTGTCGATTGCCCTGGGCAGTAGCTATGTGAACGACTTCATCGA CCGCGGTCGTGTGAAGAAGGTTTACGTGCAAGGCCTGCCCGGCGCTCGCATGAGCCCTGAAGACCTGAAGAAGTGGTACGTGCGCAACAGCGCCGGCACC ATGGTTCCGTTCTCGGCGTTCGCCAGGGGTGAATGGATCTACGGTTCGCCGAAACTGGCCCGTTACAACGGCGTGGAAGCGATGGAAATCCTCGGTGCCC CGGCGCCCGGCTATTCCACCGGTGAAGCCATGGCCGAAGTCGAAGCCCTGGCCAAGAAACTGCCGGCAGGTGTCGGTATTTCCTGGACCGGCCTGTCGTA CGAAGAGCGCCTGTCCGGCTCGCAAGCGCCAGCGCTGTACGCCTTGTCGCTGCTGATGGTGTTCCTGTGTCTGGCAGCGTTGTATGAAAGCTGGTCGATC CCGATCGCGGTCATGCTGGTCGTGCCGCTGGGGATCATCGGCGCGCTGATGGCGACCAGCCTGCGCGGCCTGTCCAACGACGTGTATTTCCAGGTGGGGC TGTTGACCACCATCGGTCTGGCGGCGAAAAACGCCATTCTGATCGTCGAGTTCGCCAAGGAGCTGCATGAGCAAGGGCGTAGCCTGCGCGATGCAGCGAT CGAAGCCTGCCGGATGCGTCTGCGACCGATCATCATGACCTCGCTCGCATTCGTGCTCGGCGTGGTACCGCTGGCCATTTCCACGGGCGCAGGTTCGGGT AGCCAACATGCGATCGGTACCGGGGTGATTGGCGGTATGCTCACGGCCACGATCCTGGCGATCTTCTGGGTTCCATTGTTCTTCGTCACCGTGTCGTCCA TGGGCCAGCGCAAAGTCGCTGACCAGGATGACGCCATTGAAACTTCTCAAGAGGCTGGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGAGCAAGTCGCTACTCTCCCTGGCAGTCACCGCTTTCGTGCTGAGTGGCTGCTCGCTGATACCCGATTATCAGCGGCCTGAAGCACCGGTGGCGGGCCA ATACCCGCAAGGCCCGGCGTATTCGCCGGCCCAGGCGCCTAACCAGGCCGCCGCTGAACAGGGCTGGAAGCAGTTTTTCCACGACCCGGCGCTGCAACAG GTGATTCAGACCGCGCTGGAGAACAACCGTGACCTGCGCGTCGCGGCGCTGAACATCGACGCTTATGCGGCTCAATACCGCATCCAGCGCGCCGACCTGT TCCCGGCGGTTTCGGCCACCGGCAGCGGTAGTCGTCAGCGGGTTCCGGCACGGGCCTCGCAAACCGGCGAAGCGAACATCAGCAGTTCCTACTCGGCCAC CGTCGGCATCAGCGCCTACGAACTCGACCTGTTCGGTCGGGTGCGCAGCCTGAGCGAAGAAGCCCTGCAGAAGTACTTCGCCACTGAAGAAGCACGGCGC
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| Amino Acid Sequence |
>multidrug transporter
MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAISVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTSS DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKSVKNFLMVIGVVSRDGSMTKDDLSNYIVSNMQDPISRTAGVGDFQVFGAQYAMRIWLDPAKLNNFNLTP VDVKTAIAAQNVQVSSGQLGGLPALPGQQLNATIIGKTRLQTAEQFKEILLKVNKDGSQVRLKDVAEVGLGGENYSVSAQFNGSPASGLAVKLANGANAL DTAKALRKTINDLKPFFPQGMEVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQNFRATVITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVL AIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKAI PKGEHGTPKRGFFGWFNRNFDRGVKSYERGVGNMLAYKAPYLLAYLIIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSSQRTQVVVDEMREFLLR PSKDGGEGDAVASVFTVTGFNFAGRGQSSGMAFIMLKPWDERNADNSVFKLAARAQQHFFTFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHNKLM EARNQFLGMAAQSKVLSQVRPNGLNDEPQYQLEIDDEKASALGVTLTDINNTLSIALGSSYVNDFIDRGRVKKVYVQGLPGARMSPEDLKKWYVRNSAGT MVPFSAFARGEWIYGSPKLARYNGVEAMEILGAPAPGYSTGEAMAEVEALAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESWSI PIAVMLVVPLGIIGALMATSLRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKELHEQGRSLRDAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGAGSG SQHAIGTGVIGGMLTATILAIFWVPLFFVTVSSMGQRKVADQDDAIETSQEAG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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