Pseudomonas mandelii 36MFCvi1.1, F626_RS0112460
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mandelii 36MFCvi1.1 F626DRAFT_scaffold00003.3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGTGCACCAACCAGAACCTGCCGCGCAAGCTCAAGCTCGGCGACATCCGCATGGCCTGTGAAGAGACCCCGGAGTTTTTGAGCTTCCGCAACATCACCC CGGCCACGTCGAGTTTCGCGCCGCCGCTGAACCGCGACTTCCTCTGGAAGCTGATCAGCAACATGTCGCTCAACTATCTGTCGCTGGCCGACGTCAACGC GTTGAAGGTGATTCTCGAAACCTACGACCTGCCGCGCTACTACGACCAGCATGCGGAAAAAGTCAGCAAACGCCTGCTGGGCGGGCTCAAGTCGATCAAG CACCAGCATGTCGACAGATTGCACCGAGGGTTGCCGGTTCGCGGGTTGCGCACCGAGCTGACCATCGACCCGGAAGGGTACATCGGCGAGGGCGACCTGT TCGTGTTCGCTTCGGTTCTTAACGAGTTTTTCGCGCTCTACGCCAGTCTCAATTCGTACCACGAGCTGCGGGTAAAAAGCACACAGGGAGAGGTGTACCA
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| DNA Sequence for Gene |
>F626_RS0112460
ATGGACACCACGTATGGGCCTGCAGCCCCTGCTTTAAGCGGGCTGACCCGGGTAATACGCGAGTACTCGCTGTTTCAGGCCGTGCTGCTGGTGATTGACC GGCTGCGCGATGCACACCCGCACCTGAGCGAAGACGACCTGTACGACCAGCTGGAATTCCAGGCCAACCCGAGCCTGGGTTTCCCTGGCAGCGACGTCGA TCGCGTGGAGTTTTTCGAAGAACACGGGATGAGGCGCGCGCGTCTGCGCTTCAACCTGATCGGCCTGGTCGGCTCCGGTTCACCGTTGCCTGCGTTTTAT GGCGAACAAGCGCTGGGTGACAGCGAAGACGGCAACCCGACTCGCAATTTCCTCGACCTGTTCCACCATCGCCTGCAACGGCTGATGCTGCCGATCTGGC AAAAGTATCGCTACCGCGCGAGTTTCCAGAGCGGCGCGCTCGACCCGTTTTCGGCGCAGCTGTTTGCCCTGATCGGCCTCGGCGGCGAAGAGATCCGCAA GGCCCAGGAACTGAACTGGAAACGCCTGCTGCCGTACCTCGGCCTGCTCAGCTTGCGGGCGCACTCGGCGGCGTTGATCGAAGCGGTGCTGCGCTACTAC TTCAAGCACGCCGAGCTGACGATCGAACAGTGCATCGAGCGCCGCGTCGAAATCCTCGACGAGCAGCGTAATCGCCTCGGTCGCGGCAACAGCATGCTCG GCGAAGACCTGGTGCTGGGTGAACACGTACGCGACCGCAGCGGCAAATTCCGCATTCACATCCGCGAGCTCGACTGGCAACGCTTTCACGAATTCCTGCC GATCGGTTTCGGCTACCAGCCGCTGTGCGCGCTGGTGCGGTTCACCCTGCGTGACCCGCTCGATTACGACATTCGCCTGGTGCTGCGCCAGGAAGAAATC CGCGAACTTCGCATCGGTGAGCAGAACGCCTGTCGCCTGGGGTGGACCAGTTGGCTGGGCCGCGAAAAAGCGGATGGCGTGGTGACCCTGGGCAGCAAAA TTCATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGACAGATGACACATGATCAACGTAGACCTGCAACAACTTATCCAGGCGCTGGACGCCGAAACCCGTCGTGATCTGGAAAGTTCTGCCGAACGCTGCGTC GCCCGTGGCGGCAGCAAGATCCTCGTCGAAGACTTGCTGCTGGGCCTGCTGGAGCGTCCGCAAGGCCTGCTCGCACGGGCGTTGCAGGATGCCGAAGTGG ACGCTGGCGAGCTGAGCGCCGCGCTGCAATCGCGGGTCGAGCACAGCGCCTCGCGCAACCCGGTGTTCGCCCCGGAACTGGTGCAGTGGCTGCAGGATGC CTTGCTGGTGGCCAACCTCGAACTGGGCCAGAGCCAGGTGGAGCAGGCCGCGTTGATCCTCGCATTGCTGCGCAACCCGATGCGCTATGCCGGCAGCCGC TATCAGTCGTTGCTGGCCAAGCTGAACATCGAGCGCCTGAAAGAATTCGCCCTGTCGCAGAAAGTACAACCGGCCACCGGCAAACCCGCCGTGCCCGGCG
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| Amino Acid Sequence |
>type VI secretion protein
MDTTYGPAAPALSGLTRVIREYSLFQAVLLVIDRLRDAHPHLSEDDLYDQLEFQANPSLGFPGSDVDRVEFFEEHGMRRARLRFNLIGLVGSGSPLPAFY GEQALGDSEDGNPTRNFLDLFHHRLQRLMLPIWQKYRYRASFQSGALDPFSAQLFALIGLGGEEIRKAQELNWKRLLPYLGLLSLRAHSAALIEAVLRYY FKHAELTIEQCIERRVEILDEQRNRLGRGNSMLGEDLVLGEHVRDRSGKFRIHIRELDWQRFHEFLPIGFGYQPLCALVRFTLRDPLDYDIRLVLRQEEI RELRIGEQNACRLGWTSWLGREKADGVVTLGSKIH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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