Pseudomonas mandelii 36MFCvi1.1, F626_RS0112285
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mandelii 36MFCvi1.1 F626DRAFT_scaffold00003.3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGACCTGCCGCTGTTCATGAGCGTGGGTAACAACAAGACCGACTTCACCCTGGCCGACAGCGCGCCGGTAGCGGCGGTACGCTGCGTGGCAGGCCCGA GCCGCCCACGCGCCAGCCATGCCCACGACGCCAAGGCCTGGCGGTTGATCAGCCAGCTTTCGCTCAATTACTTGTCCCTCAGCGAGCAAGGCCAGGGCGC CGCCGCCCTGCGCGAGCTGCTGCGCCTGTATGGCGACGACAACGATGCAGCCTTGCAATTGCAGATCGAAGGCCTGCGCGAAGTCAGCAGCAAACCCTGC ACCCGACGTTTGCCAATGCCGGGCCCGATCGTGTTTGGCCGCGGTATGGAAATCACCCTGGAATTCGATGAGAACGCGTTTCGTGGCACGGGCGTCTTTT TGCTCGGTGCAGTCTTCGAGCGCTTCCTGGCACGTTACGTGTCGATCAACAGTTTTACCGAGACGGTGATCCGTACCACCGAGCGCGGCGAGATCATGCG
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| DNA Sequence for Gene |
>F626_RS0112285
ATGGAAAGCCAAACCCGGACGCCGTCCGACCCTGTGAATACCCTGGACGCGATGCACCAGCAGCCCTGGGAATACGACTTCTTCCAGGCATTACGGCGCA TCGAGTGCGAATCGCCTGAGCTTCCGCGCCTGGGTCATTCGTTGCGCCTGGCCGATGACCCCTTGCGCCTTGGGCAACAGGCCGATTGCACCTTCGCCCC GGCGACCCTGGCCTCGGTACAGCCGGGCATCGACGGTTCGCCGGCGCGTCTGGAACAGTTCTTTTTTGGCCTCGGCGGCCCCAACGGCCCGTTGCCGCTG CACCTCACCGAATATGTGCGTGAACGCCAGCGCAACAACGCCGACAGCACCAGCAAACGCTTTCTGGATGTGTTCCATCATCGCCTGCTGAGCCTGTTTT ACCGGGCCTGGGCCGAAGCGCGACCGACAGTCAGCCATGATCGCCCGGACGATGACTACTGGTCGGCACGTCTGGCAGCGCTGAGCGGTCGAGGCATGCC GAGCCTGCTCAAACAAGGCCTGATACCCGACACGGCGAAGCTGCATTACAGCGGTCATCTGTCGGCACAAACCCGCTATCCCGACGGTTTGAAGGCAATC ATCGGCGAGTACTTCGGCCTGCCGGTGGAGATCGAAGAATACGTCGGCCAATGGCTGGTGCTGCCGGAGCGCAGCCGCGTGGGCGTCAGCGCTCATCAAT TGGGCGTGGATTTTTGCCTGGGCCGCTGCGTCTGGGATCGCCAGCACAAATTCCGCATTCGCCTGGGGCCGCTCAAGCTGGATGACTACATGAGCATGTT GCCCGGCAGCCCATCCTTCAATGAGCTGGTGGCCTGGGTGGCCGAATACCTGGGCCATGAACTGGACTGGGATCTGAACCTGGTTCTGAAACAGCCCGAA GTGCCGACACTGCAACTCAATGGCCGCTTCCGCCTGGGGTTCAATACCTGGGTGGGCAAGCCCGCAAAAGATGCCAAGGACTTAATACTCGCCCGGCATT ACGCCGAACAAGCCAACACCTCACAGATCTCAAGGAGCCAAGAGCATGGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATCAGTCGCGCCGCGTTGTTCGGCAAACTCAATAGCGTGGCCTACAAAGCCATCGAAGCCGCCACCGTGTTCTGCAAGTTGCGCGGTAACCCTTATGTG GAACTGGCCCACTGGTTTCATCAGTTGCTGCAATTGCAGGATTCGGACCTGCACCGCCTCATCCGCCAGTTCAATATCGAGCCGGCGCGCCTGGCCCGGG ACCTGACCGAAGCCCTGGACCGTTTGCCACGGGGCTCGACGTCAATCACTGACTTGTCTTCCCATGTGGAAGAAGCCGTGGAGCGTGGCTGGGTCTACGG CAGCTTGATGTTCGGCGAAAGCCAGGTGCGTACCGGTTATCTGGTGCTGGGCATCCTCAAGACCCCGAGCTTGCGCCATGGATTACTGGGACTGTCGGCA GAGTTCGACAAGATCAAGGTCGAGGCCCTGAGCGAGCGTTTTGACGAGTACGTCGGCGACTCGCCGGAAAATGCACTCAGCGCCAGCGATGGTTTCAACG
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| Amino Acid Sequence |
>type VI secretion protein
MESQTRTPSDPVNTLDAMHQQPWEYDFFQALRRIECESPELPRLGHSLRLADDPLRLGQQADCTFAPATLASVQPGIDGSPARLEQFFFGLGGPNGPLPL HLTEYVRERQRNNADSTSKRFLDVFHHRLLSLFYRAWAEARPTVSHDRPDDDYWSARLAALSGRGMPSLLKQGLIPDTAKLHYSGHLSAQTRYPDGLKAI IGEYFGLPVEIEEYVGQWLVLPERSRVGVSAHQLGVDFCLGRCVWDRQHKFRIRLGPLKLDDYMSMLPGSPSFNELVAWVAEYLGHELDWDLNLVLKQPE VPTLQLNGRFRLGFNTWVGKPAKDAKDLILARHYAEQANTSQISRSQEHG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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