Strain | Pseudomonas mandelii 36MFCvi1.1 F626DRAFT_scaffold00003.3, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GGGCGGCGACATCGACATCGCCATCAGTCCGCAACTGGCGACCATCGGCACGTTGTTGGCCCACGTCCGGCGCGGGGACATTGTCAGCGTGCACTCACTG CGCAGGGGCGCGGCGGAAGCCATCGAGGCAATTGCCCACGGCGATGCGAAGTCGAGCAAGGTGATAGGCAAGGCCATCGAAAACATCGGCCTGCCACCGG GCACCACCATCGGCGCGATCATCCGCGACGAAGAAGTGATCATCGCCCACGACGACACCGTGATCGAAACCGGCGACCATGTGATTCTGTTCCTTGTGGA TAAGAAGCATATTCGGGACGTGGAGAAGCTGTTCCATGTGGGGTTGAGCTTCTTCTGATCCGAAGACCTCTTCGCGGGCAAGCCTCGCTCCTACAGGTTT GAGCCGTCCAGCTATTATGCGAACGACTGAACCGTGTAGGAGCGAGGCTTGCCCGCGAAGGCGATTTCGAACTCCCCCAAAAAACCAGAGGTGCCACCCA
|
|
DNA Sequence for Gene |
>F626_RS0111665
ATGATCGAATCCCTGGAAAAAATGCTCGCCAAGGGTGTGGATAACTCATTGCTGCGCTTCGGCCTGGGCAAGGGTTATCTGGATCTTGGGGAAAACGCCA AGGCCGCAGAGCATTTCCAACGCTGCGTCGAGTTCGATCCGAAGTATTCGGCAGCCTGGAAGCTCTTGGGCAAGGCCCATTTGGCGCTGGCGGATTACGC GGCGGCGCGGCAGGCCTGGGAACAGGGCCTGGAAGCCGCCCGCGCTCATGGCGACAAGCAGGCGGAGAAAGAGATGACGGTGTTTCTGAAAAAGCTTGAG CGACAGACGCACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
TCAGCGATAACGCAGGCCAAGATCAATAGATCGCAGCCTGCGGAGTTATCCACAGCAACCTCAATACCAGCGTGCTTCGCCCGGTGGACGCTTCTTGAAG CGCTTCATGCTCCACATGTACTGGCTCGGATAAGCCCGCACATAGCGCTCGACTACCTGGCTCATGGCCGCGCAGGAGGTTTCGGTATCGGTGCTGTACA TGGCCTCTGGCGCGGCTTCGAGAATCACTTTGTAACCCGAACCGTCCGGCAGGCGCAGGGCATGCAGGAACACGCCGACCGCTTTGCCACCGGCGAGCAT GTTCGGCACGAATTTGCTGGTCAGGGCCTGAGTGGCGAAGAACGGCACGAAGATCCCGGCGGATTCGGCCGGTTCCGGGTCAGCCGGAATGCCCACCGCG CCACCCTTGCGCACTTCCTTGATCACGCTGAGGATGCCTTCCTTGGTGGAAGCCGCCACCCGGTTACCCAATTGCACCCGCTGCTTGCGCAGCAACTCAT
|
|
Amino Acid Sequence |
>hypothetical protein
MIESLEKMLAKGVDNSLLRFGLGKGYLDLGENAKAAEHFQRCVEFDPKYSAAWKLLGKAHLALADYAAARQAWEQGLEAARAHGDKQAEKEMTVFLKKLE RQTH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|