Pseudomonas mandelii 36MFCvi1.1, F626_RS0111400
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mandelii 36MFCvi1.1 F626DRAFT_scaffold00003.3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGGTCAGCTCCAATTACGCGGCGGTAGCCTGCATCGACTTTCCGACCTGCCACGGCCAATGGCTGCCACCGGCTGATTTCGCCAACGGTTTTCACCTGA CCCAACACATCGGCCCGAATTATCTGGGCGGGCAGCTGGACAGCGATGCCCGCACCGCGATTCACCTGACTCACCGCATCGGCGCGTTACTGGTCACCTT TGTTCTGCTCGGTCTGGCCTGGCAACTGAAGGTCGTCGGCATGACGCGCCTGGCTGTCATGGTGCTGATCGCCCTTGCCGCACAAATCACCCTGGGCATC AGCAACGTGGTGTTCCACTTGCCGCTGCCGGTGGCCGTCGCCCACAACGCCGGCGGTGCGGCGCTGTTGCTGACGATGGTGCTGGTCAATTATCACGCGC GAACCAGCCTGGTTCGGGTCAAGCATCAGCCCCCTCGGCGCTGGCGACTACGCCCGCGTAAACACTCGGCCGGGCCCATAACAATAAAAGGAGAGATGCC
|
|
| DNA Sequence for Gene |
>F626_RS0111400
ATGGCGACTCTGATCGGCGAACGTCACAGTCAGGCCATCTGGCGAGACTACCTGGAACTGACCAAGCCGAAAGTGGTGGTGCTGATGCTCATCACCTCGC TGGTCGGCATGTTTCTCGCGACCCGCGCCGGGGTGCCATGGACGGTGCTGGTATTCGGCAATCTGGGGATCGCCCTGTGTGCCGGCGGTGCCGCGGCGGT CAATCATGTGGTGGACCGGCGCATCGACGCGGTCATGGCCCGGACCCACAAACGGCCCCTGGCCGAAGGCCGGGTGTCTCCAGCCGCTGCGCTGACCTTC GCCCTGATACTGGCAATGCTCGGTCAGGCCTTGTTGCTGACTTTCACCAACCCGCTGACAGCATGGCTGACCCTCGCCTCCTTGCTCGGTTATGCCGTGG TCTATACCGGTTTTCTGAAACGCGCGACGCCGCAGAACATCGTCATCGGCGGCCTCGCCGGAGCTGCCCCGCCACTGCTCGGCTGGACCGCCGCCACCGG TCATGTCGGCGCCGAACCATTGTTGCTGGTGCTGATCATCTTCGCCTGGACCCCGCCGCACTTCTGGGCGCTGGCGATTCACCGCAAGGAGGAATACGCC AAGGCTGACATTCCGATGCTGCCGGTGACCCATGGCGAGCACTACACCAAAGTCCACATCCTGCTTTATACCTTTGCGTTGCTGGCCGTCAGCCTGATGC CCTACGTGATCCACATGAGCGGCGTGCTCTACCTGATGTGTGCCCTTTTACTGGGCGCCAGGTTTCTGCAATGGGCCGTGGTGCTGTACCGTGGCACTCG ACCGCACGCGGCGATCAACACGTTCAAGTACTCTATCTACTACTTGTTCCTGCTGTTTATCGCGCTGCTCGTAGACCACTACTTACTGTTGATCCTATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CTCGAACCCAGAAAACCGTCTTCATCCTCGTTGCCCTGATCGCGCTGATCCTGGGCCTGACCGTCAATAAAGTACTGACCGGGAAAAACCAGGGCGACCC GACGGCGCTGATCGATGCAGGGATCATCTTGCTGCCCCAAAGCCGCAATCTGCCGGACGTGAAGATGACCGATCAGGACGGCAAGCCAGTGGCGATCAAC GAACTGAAAGGCAAGTGGAGTTTGCTGTTCTTCGGCTACACCTTCTGCCCGGACATCTGCCCGACCACCCTCGCCCAGCTGCGGCAGATCAAGAGTGAAC TGCCGGCGGATGCGGTGAACAAGTTGCAGGTCATCCTGGTCAGCGTCGACCCGAACCGCGATACGCCCAAGCAACTCAAGCAGTACCTGGGCTACTTCGA TCCGCAATTCATCGGGCTGACCGCGTCCTCGGTCGAAGACCTTCAGAAAATGGCCAACGCGGTGAGCATTCCGTTCATTCCGGCGGACACCAGCAAACCG
|
|
| Amino Acid Sequence |
>protoheme IX farnesyltransferase
MATLIGERHSQAIWRDYLELTKPKVVVLMLITSLVGMFLATRAGVPWTVLVFGNLGIALCAGGAAAVNHVVDRRIDAVMARTHKRPLAEGRVSPAAALTF ALILAMLGQALLLTFTNPLTAWLTLASLLGYAVVYTGFLKRATPQNIVIGGLAGAAPPLLGWTAATGHVGAEPLLLVLIIFAWTPPHFWALAIHRKEEYA KADIPMLPVTHGEHYTKVHILLYTFALLAVSLMPYVIHMSGVLYLMCALLLGARFLQWAVVLYRGTRPHAAINTFKYSIYYLFLLFIALLVDHYLLLIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|