Pseudomonas mandelii 36MFCvi1.1, F626_RS0106765 (flhF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mandelii 36MFCvi1.1 F626DRAFT_scaffold00002.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAAGTCTTGCAGGCGTTGCTGGCCGAACAGGTGCCGGTGCGGGACATCCGCAGCATCGCCGAAGCTATCGCGAACAACGCCGCCAAGAGTCAAGATACCG CCGCTTTGGTGGCCGCGGTGCGCGTCGGCGTATCCCGTGCAATCGTGCAAAGCATTGTAGGCACTGAGTCGGAGCTGCCTGTGATCACCTTGGAACCAAG GTTGGAACAAATATTGCTCAATAGTCTTCAGAAGGCAGGACAAGGCTCGGAAGAGGGCGTTCTGCTGGAGCCAAGCATGGCGGAAAAACTGCAACGTTCG TTGATCGATGCGGCGCAGCGTCAGGAAATGCAAGGTCAGCCGGTGATTCTGCTGGTGGCCGGTCCGGTTCGCGCGATGCTCTCGCGATTCGGTCGGCTGG CAGTGCCGGGTTTGCACGTGTTGGCTTACCAGGAAATTCCTGACAACAAGCAAGTGACCATCGTTGCGACAGTAGGGCCCAACGGCTGAGGTAGTGGTTT
|
|
| DNA Sequence for Gene |
>F626_RS0106765
|flhF
ATGCAAGTTAAGCGTTTTTTCGCCGCCGATATGCGTCAGGCCATGAAACTGGTTCGTGATGAGCTGGGCGCTGATGCCGCCATCATTGGCAATCGCCGGA TCGCCGGCGGTGTCGAGCTGACGGCTGCCCTGGATTACAAATTGTCGGCGCTGGCCCCGCGTGTTCCGAACATGGAACTCGAGGATGAGCTGCGCAAGAC CCAGTCGCGGATCGTCACCGCCCAGGCCGAACTGAGCCTGCGCGGCGATGGCGAGAGCGACAAGACCACCAATCGCCAGTTGTTCGCCGGCCTGCCGTTG ACCGCCGCCGAACCGCTGATCGAACCGACGCTGGCCGAGCCTCGGCGCCCGGCTCCCGCGCCTGCAGCGGCGACCGGTGTCGATCCGCGCGCATTCGATT CGATGCGTTTCGAACTCAACAGCCTGCGTGAACTGATGGAAGTGCAGCTGGGTTCTTTAGCCTGGAATCAGCTGCAAGGCAGCCGTCCGGCCCAGGCCAA CCTCTGGCGTCGCCTGCAACGCATCGGCTTGTCCGGCCCGTTGTCGCGCGATCTGCTGGCGCTGATTACCGACATTGAAGAGCCGCGTCAGGCCTGGCGC ATGTTGCTCGCGCACCTGGCGCGGATGATCGCTACCCCGGAAATCGAGCCGCTGGAAGAGGGTGGGGTGATTGCCATGGTCGGCCCCGCCGGCATGGGCA AGACCACCACACTGGCCAAGCTCGCGGCCCGTTACGTGCTCAAGTACGGCGCGCAGAACATCGCGCTGGTGAGCATGGACAGCTATCGCATAGGTGCCCA GGAACAGCTCAAGACGCTGGGCCGGATCCTCAATGTGTCGGTGACCCACGTCGACCCGGGTCAATCCCTGGTGCAGGCGCTGGAGCCCTTGCTGCGCAAA CGCGTGGTGCTGATCGATACCGCCGGCCTTCAGGCCAGCGACCCGGCACTGCGGATGCAGCTCGAAAGCCTGGCCGGGCGTGGCATCAAATCAAAAAATT ATCTGGTCCTGGCAACCACCAGCCAGAAACAGGTTCTAACCGCCGCTTATCACAGTTACAAACGCTGCGGCCTCGCCGGCTGCATCCTGACTAAACTGGA TGAAACGGCAAGTCTGGGCGAGGTGTTGAGCCTGGCGATCAGTCATGAGTTGCCGGTGGCTTACCTGACCGATGGTCCGCGGATTCCGGATGATTTGCAT CTGCCACGTCGTCATCAGTTGGTCAGCCGCGCCGTTAGCGTACAAATGCAGGAAGAACCCAGCGAAGAAGCCATGGCTGACATGTTCGCTGATATTTACC ACAGCCCGACCAAGCAGGTTGGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGTGTTAATGAACATTTTTTGTACCTACATCGATGGTCTGCCATGCATTGTTCCGATGGTGAACGCGCAGCCAGTAATGTGGCCTCCGTCTAAGTAAGAC AAGGTAAAGAAATAACATGGGCAGCATGCATCCCGTACAGGTGATCGCGGTGACCGGCGGCAAAGGTGGCGTCGGGAAGACTAACGTGTCAGTGAACTTG TCCCTGGCTCTAGCTGAGCTCGGCCGGCGCGTCATGCTGCTGGATGCCGATCTGGGGCTGGCGAACGTCGACGTTCTGTTGGGACTGACACCCAAACGCA CGCTGGCCGACGTGATCGAAGGCCGCTGTGAGCTGCGCGACGTGCTGTTGCAAGGGCCTGGCGGTATCCGCATCGTCCCGGCCGCCTCCGGCACCCAGAG CATGGTTCATCTGAGCCCGGCCCAGCATGCCGGCCTGATCCAGGCATTCAGCGATATCGGCGACAACCTCGACGTATTGGTGATCGACACCGCTGCGGGC
|
|
| Amino Acid Sequence |
>flagellar biosynthesis regulator FlhF
MQVKRFFAADMRQAMKLVRDELGADAAIIGNRRIAGGVELTAALDYKLSALAPRVPNMELEDELRKTQSRIVTAQAELSLRGDGESDKTTNRQLFAGLPL TAAEPLIEPTLAEPRRPAPAPAAATGVDPRAFDSMRFELNSLRELMEVQLGSLAWNQLQGSRPAQANLWRRLQRIGLSGPLSRDLLALITDIEEPRQAWR MLLAHLARMIATPEIEPLEEGGVIAMVGPAGMGKTTTLAKLAARYVLKYGAQNIALVSMDSYRIGAQEQLKTLGRILNVSVTHVDPGQSLVQALEPLLRK RVVLIDTAGLQASDPALRMQLESLAGRGIKSKNYLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPDDLH LPRRHQLVSRAVSVQMQEEPSEEAMADMFADIYHSPTKQVG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|