Pseudomonas mandelii 36MFCvi1.1, F626_RS0105400

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas mandelii 36MFCvi1.1 F626DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TTCTCGACCTCGGCGGCGACATCAAAGGCGATAGCTTGCTTGAGGGTTACAAGGACAAGATCGAAGTCATGTCCTACAGCCACAACGTGGCCATGCAGGT GACCAACGACGTCAGCAACTCGGAGCGGACCTCCGGCAAGCCGCACATCGGCGAGTTCACCCTGACCAAATTCGTCGACAGCTCGACGCCTTCCCTCAAC GAATATTGCTGCGCCGGCAAACCGATCCCCGAAGCCAAGATCACCATCGGCCGTAACGCCGCCGAAGGCAGCGGTCAGTTGATGCCGTTCATCATCTACA CCCTGACCAACGTGGTGCTGTCCAACGTCAGCGTCAGCGGCGGCACGGGTGGCAAACCGGTGGAAACCATTTCCCTGAACTTCACCAAGATCAAGTGGGA GCTCACCGCCCAGAAAGACGACGGCACCAAGGAAGGCACGGCCGCCTCGACCTGGGACATGGCCGCCAACAAGCTCGTCAAGTAAGCGGACGCGTCGGCC
DNA Sequence for Gene
>F626_RS0105400
ATGGCAGGCACCGGCATGCTCCCACCGTTGTTCGAGCGCCTCGCCGCCAGCGAGGTCGACACCGTGCAGGTGTTCGATCGCCAGGGGCTGCTCGACTCGG TGCACACGGAGTTGCTGCGCCTGTTCAACACCCGACGCGGCTCACGTCCGCTGACCTCTCCGCCGAGCATTCTCGACTACGGCATCGCTGACTGGACTGC CTTGCAACAGCAGCGCAGCGATGACCGTCGTCAGTTGGCACGGGAAATCCGCGAGGCCATCAGCCATTTCGAACCGCGCCTGCAACTGGGCGAGGTCCAG GTCAATCCGGTCCCCGGCCATCCGCAGCAACTGAGCATTCGGCTACTGGGCGAGTTGCGCAGCGGCCAGCAGCACTGGCCCGTGGCATTTGTCATCGAGA AGGCCAGCCATGGCCTTGAGGTGCGTCATGAGCGACTCGATTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCGCAACTGCTCGATTACTACCAACGCGAACTGACCTGGCTGCGCCACGCCGGGAGCATTTTTGCCGAGCGATATCCCAAGGTCGCCAGACGCCTGGAA CTGTCCCCCGGTGAATGCCCCGACCCACATGTCGAGCGGCTACTTGAAGGTTTCGCCCTGCTCGCGGCACGCCTGCAACGGCGGCTCGATGACGACTATG CCGAGTTCAGCGACGCCTTGCTCGAACAGCTTTACCCGTTGGCCATGCGGCCGTTGCCGTCCTGCGCGATCGTGCAGTTCGAGCCGGACCCGAGCAAGGG CAACCTGAACGATGGTTATCCATTGCCGCGCGATACACCGCTATTCGTCACCACCAGCAAAGGCGAGAGCATCCATTTTCGCACCAGCGCCGCGGTTCGA TTGTGGCCGGTGGAAATCAACGAAGCGCTGCTGCTGGGCAGCGATGAAGCACAGGCCCTGACCGGTGTGGCGCAGGCGCGTTCGGCCCTGCGCCTGAGCC
Amino Acid Sequence
>type VI secretion protein
MAGTGMLPPLFERLAASEVDTVQVFDRQGLLDSVHTELLRLFNTRRGSRPLTSPPSILDYGIADWTALQQQRSDDRRQLAREIREAISHFEPRLQLGEVQ VNPVPGHPQQLSIRLLGELRSGQQHWPVAFVIEKASHGLEVRHERLD
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site