Pseudomonas mandelii 36MFCvi1.1, F626_RS0103600
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mandelii 36MFCvi1.1 F626DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGACAACCAGGTCAACCCGAAGACCGGCACCATCCGCGGTCGTGCGGTGTTCGACAACAGCGACGGCAGCTACACCCCGGGTCTTTATGCACGCCTGAA ACTGGTGGGCAGCGGCACCTACTCCGCGGTGTTGATCAACGACGAAGCGGTCGGTACCGACCTGGGTAAAAAGTTCGTGCTGGTGATGGATGCCGACAAC AAAACGGCTTATCGCCCCGTCGAGCTGGGTCCGAAAATCGAAGGTTTGCGCATCGTGCGCAGCGGCCTGAACAAAGACGACACCATCATCGTCAAGGGTT TGCAACGGGTTCGCCCTGGTTCGCCGGTCAGCCCTGAAGTGATCCCGATGGCCAGCAAGGAAACCCTCGCGGCTCTCGCTCAACAACGACAAGCGCTGGA AGCCAGCAACCTGCCCCAAGTCGCACCTGCCAAGGTCGCGCCGGGTACGGTTGTGAAACTGGCTGCTGCGACTCCACGCGGTTAAGGGGCAATTACTCCG
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| DNA Sequence for Gene |
>F626_RS0103600
ATGAATTTCTCCCAATTCTTCATTTCACGGCCGATCTTTGCAGCGGTACTGTCGCTGCTGATCCTGATCGCCGGTGCCATCTCGCTGTTCCAGTTGCCGA TCAGCGAATACCCGGAAGTGGTGCCACCAACCGTGGTGGTCCGTGCCAACTTCCCCGGCGCCAACCCTAAAGTCATCGGTGAAACCGTGGCCGCTCCTCT GGAGCAAGCCATCACCGGCGTCGAGAACATGCTGTACATGTCCTCGCAATCCACCGCTGACGGCAAGATCACCCTGACCATCACCTTCGCCCTGGGCACC GACCTGGACAACGCGCAGGTGCAGGTGCAGAACCGCGTGACGCGTTCCGAGCCCAAGCTTCCCGAGGAAGTGACGCGCATCGGTATCACCGTCGACAAGG CGTCGCCCGACCTGACCATGGTTGTGCACTTGACCTCGCCGGACAAACGCTACGACATGCTCTACCTGTCCAACTACGCCTTGCTCAACATCAAGGATGA GCTGGCGCGTCTGGGCGGTGTCGGTGATGTGCAGCTGTTCGGCATGGGCGATTACTCGCTGCGGGTGTGGCTCGATCCGAACAAGACCGCTTCGCGCAAC CTGACCGCCACCGATGTGGTCACCGCGATTCGTGAACAGAACCGTCAAGTGGCGGCCGGTGCCCTGGGTGCTCCGCCCGCACCGAATGCCACAGCATTCC AGCTGTCGGTCAACACTCAAGGCCGTCTGGTGTCCGAGGAAGAGTTCGAGAACATCATCATTCGCTCTGGCGAAAATGGTGAAATCACTCGCCTCAAAGA CATCGCTCGCGTCGAACTCGGCTCCAGCCAATACGCCCTGCGCTCCTTGCTGAACAACCAGCCGGCGGTGGCGATCCCGATCTTCCAGCGCCCAGGCTCC AACGCGATCCAGATCTCCAACGACGTTCGGGCGAAAATGGCCGAGCTGAAGAAGAACTTCCCGGAAGGTATGGACTTCAGCATCGTCTATGACCCGACGA TCTTCGTGCGCGGTTCCATCGAGGCGGTGGTTCACACCCTCTTCGAAGCGCTGATCCTGGTTGTGCTGGTGGTGATCCTGTTCCTGCAAACCTGGCGCGC TTCGATCATCCCGTTGGTGGCGGTGCCGGTTTCGCTGATCGGTACGTTTGCCGTGATGCACCTGTTCGGCTTCTCGCTGAACGCCCTGTCGCTGTTCGGA CTGGTATTGGCCATCGGTATCGTGGTCGACGATGCGATTGTGGTGGTGGAGAACGTCGAGCGAAACATCGGGCTCGGACTCACTCCGGTAGAAGCCACCA AGCGTGCGATGCGTGAAGTGACCGGTCCGATCATCGCGACGGCGCTGGTGCTGTGTGCGGTGTTTATCCCGGCCGCGTTCATCTCCGGCTTGACCGGTCA GTTCTACAAACAATTCGCCCTGACGATTGCGATTTCGACCGTGATCTCGGCCTTCAACTCGCTGACCTTGTCGCCAGCACTGGCCGCCGTGTTGCTCAAA AGTCATGACGCGCCGAAGGACCGTTTCTCCAAGGTGCTGGACAAGATCTTCGGTGGCTGGTTGTTCCGTCCGTTCAACCGCTTCTTCGATCGTGCCAGCC ATGGCTATGTCGGCACCGTGGGCCGCGTTATCCGCAGCAGCGGTATCGCCCTGCTGCTGTACGCAGGCTTGATGGTGCTGACCTTCTTCGGTTTCTCCAA CACGCCGACCGGTTTCGTACCTGGCCAGGACAAGCAATACCTGGTGGCCTTCGCTCAACTGCCGGATGCCGCGAGCCTGGACCGTACCGAAGACGTGATC AAGCGCATGTCCGACCTGGCCCTGAAACAGCCTGGCGTGGAAAGCGCGGTGGCCTTTCCTGGCCTTTCGATCAACGGTTTTACCAACAGCCCTAACGCCG GCATCGTGTTCGTCACCCTGAAGCCTTTCGACGAGCGTAAAGACCCGAGCATGTCCGCCGGGGCGATTGCCGGTGCGTTGAACGGCCAGTACGCCGGGAT TCAGGAAGCCTACATGGCGATCTTCCCGCCACCGCCTGTACAAGGCCTGGGGACCATTGGCGGTTTCCGCCTGCAGATCGAAGACCGGGGCAACCTGGGC TATGACGAGCTGTACAAAGAAACCATGAACATCATCGCCAAGAGCCGCAGCGTGCCGGAACTGGCCGGTCTGTTCACCAGCTACACCGTGAACGTGCCGC AGGTCGATGCCGCCATCGACCGGGAAAAAGCCAAGACCCACGGCGTGGCCGTCAGCGACATCTTCGACACCCTGCAGATCTACTTGGGTTCGTTGTATGC CAACGACTTCAACCGCTTCGGTCGCACCTATCAGGTCAACGTTCAGGCCGAGCAACAGTTCCGCCTCGAATCGGATCAGATCGGTCAGCTGAAAGTGCGT AACAACCGTGGCGAGATGATCCCGCTGGCGACCTTCATCAAGGTCAGCGACACCTCGGGGCCAGACCGCGTGATGCACTACAACGGCTTCATCACCGCTG AAATCAACGGTGCGGCAGCCCCAGGCTACAGCTCCGGCCAGGCCGAGAAAGCCATCGAGAAACTGCTCAAGGATGAACTTCCGAACGGCATGACCTACGA GTGGACCGACCTGACCTACCAGCAGATTCTGTCCGGCAACACTGCGCTGTTCGTGTTCCCGCTCTGCGTACTGCTGGCGTTCCTGGTGCTCGCTGCTCAA TACGAAAGCTGGAGCCTGCCACTGGCGGTGATCCTGATCGTACCGATGACCCTGCTGTCGGCCATTACCGGGGTGATTGCCTCGGGCGGCGACAACAACA TCTTTACCCAGATCGGCTTGATCGTACTGGTGGGACTGGCCTGTAAGAACGCGATTCTGATCGTCGAGTTTGCCAAGGATAAGCAGGAAGAAGGTCTCGG CCCGCTGGCAGCGGTACTGGAAGCTTGCCGTCTGCGTCTGCGGCCGATCCTGATGACCTCCTTCGCGTTCATCATGGGTGTTGTGCCACTGGTCTTCTCC AGCGGCGCCGGTGCCGAAATGCGTCATGCCATGGGTGTGGCGGTGTTCTCCGGGATGCTCGGGGTGACCTTCTTCGGTCTGCTGCTGACGCCGGTGTTCT ACGTACTGATTCGCAACTTTGTGGAACGCGGTGAAGCGCGCAAAGCGGCCAAAGCCCTGAAACTGGAGGCGCAACAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCTGAAAGCCTTCCTGCCGAGCCTGCTGGTACTGGCGCTGAGCGCCTGTGCCGTCGGCCCGGACTACAAGACCCCAGCCACCGAGGCGGCCAACATCAC GGCCGCCACCGATGGCAGCGCCGGTCAGAAGAACTTTGACCGCGCCCGTTTCGAAGGCATCTGGTGGCAGCAATTCGACGATCCGACCCTCAACCAGTTG GTGAAGCAATCCTTGCAAGGCAACCGTGATTTGCGTGTGGCTTTTGCCCGCTGGAAAGCGGCCCGGGCGATTCGCGATGACGCCAGCAATGACGCCATGC CGACCATCACCAGCCGCGCGAGCAGCGATCTGGGCAAAGGGCAGATTCCCGGCCAGACCACTAAACGGGTCAACAGCGAACGCTATGACCTGGGCCTGGA CATGGCCTGGGAACTGGACCTGTTCGGTCGCATCCAACGCAACCTGGAATCCAGCGACGCTGAACAGCAAGCGGCCGAAGCCGATCTTTACCAACTGCAA
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| Amino Acid Sequence |
>transporter
MNFSQFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVAAPLEQAITGVENMLYMSSQSTADGKITLTITFALGT DLDNAQVQVQNRVTRSEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYALLNIKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTATDVVTAIREQNRQVAAGALGAPPAPNATAFQLSVNTQGRLVSEEEFENIIIRSGENGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS NAIQISNDVRAKMAELKKNFPEGMDFSIVYDPTIFVRGSIEAVVHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIGLGLTPVEATKRAMREVTGPIIATALVLCAVFIPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK SHDAPKDRFSKVLDKIFGGWLFRPFNRFFDRASHGYVGTVGRVIRSSGIALLLYAGLMVLTFFGFSNTPTGFVPGQDKQYLVAFAQLPDAASLDRTEDVI KRMSDLALKQPGVESAVAFPGLSINGFTNSPNAGIVFVTLKPFDERKDPSMSAGAIAGALNGQYAGIQEAYMAIFPPPPVQGLGTIGGFRLQIEDRGNLG YDELYKETMNIIAKSRSVPELAGLFTSYTVNVPQVDAAIDREKAKTHGVAVSDIFDTLQIYLGSLYANDFNRFGRTYQVNVQAEQQFRLESDQIGQLKVR NNRGEMIPLATFIKVSDTSGPDRVMHYNGFITAEINGAAAPGYSSGQAEKAIEKLLKDELPNGMTYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAITGVIASGGDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQEEGLGPLAAVLEACRLRLRPILMTSFAFIMGVVPLVFS SGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRNFVERGEARKAAKALKLEAQQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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