Pseudomonas caeni DSM 24390, H591_RS0109780
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas caeni DSM 24390 H591DRAFT_scaffold00006.6_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGAAATTTGGTGGTGGTTGCCAAGGTTGCGGTCAAGCCGATTACACCTTGAAAGAAGGCATCGAGAAAACCTTGATGGCACGTATTCCTGAGGTTAAGGG TGTGCGTGATGTAACAGACCACAGTATCACCGAGAATGCATACTATTAAATAAGGCTTGCGCACAGGACTTTGGTCAAATAGATCAAGTGCCGGTGAAAG CATAAAATGATCAGTGTGAAAAAGCTTGAACATTACCCTGCAAAAGCTTTTGAGTATGTTTAAACATGCTGGCTATTAAGTTGGATGATCCTGACTTATT TAGTTTATTTATCTTATCTGTCTTAATTCTTCATGTCTTGAGACCTTAAAAAAACCGCTAACAGTCATAAGCTGTTAACGGTTTTTTTGTTTTAAAAGGT TACTCCTCGCACATTCTTTTGTGATTTCATAAGTTGCCCCTATTCAAAGCACTGCAAGCATGCTAAAACCTGCTAGCTGCTTGATAAAAAAGGGAAAATA
|
|
| DNA Sequence for Gene |
>H591_RS0109780
ATGAACAAATCCGAATTAATCGAGCGTATTGTTGATCAACAAGAGCAACTGTCAGTACGAGATGTTGAGTTGGCAGTTAAGACTATGTTGGAACATATGA CGCAAGTATTGTCTTCTGGAGAGCGAATTGAAATTCGCGGCTTCGGAAGTTTTTCATTGCACTACCGAGCCCCTCGATTAGGCCGCAATCCTAAAACAGG AGAAGCGGTTGAGCTTGAAGGTAAATATGTGCCACATTTCAAACCAGGTAAAGAGTTACGCGATCGAGTCAATGATTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCATCGGCCTAGTTATTGTCTGGCCGCATGCAGAGGGTTTTATGCAAAGTTTTAAACGTTTATTAGTATTGATTATTGCTGTTGCGCTGGCTGCTGCGGT GGTTTTTTTCACCCTAGAAAACCGTACACCAATGAGTTTATTGTTTTTTGGCTGGCAAACACCTGAGTTGCCGATAGCGCTGTATGTCATGAGCGCTTTT GTTTTAGGTTTAGTTCTCGGCCCGTTGCTGTCGTGGTGGCCACACCAGCGCATGCGCATGCGCTATAATAAGCAAGTTAAACAACTGCGTGCCTGCGAGC AGAAGATTGAAACACTGCAAGCGGCAGAGCAAGCAGTGTCAGTTAAGGCTGTTGAAGAGCTGCCTAAAGCTTAGTCATCATCACAGTTAAACTGCGCCAA TAACGAGCGCTGCTTAGCTTGCAAACGACTACATAGGGCTGGAGCGTCCAGTCATCTCACGCGCCATTTCCGTGGCATAGCTGTCAGTCATCCCGCCAAT
|
|
| Amino Acid Sequence |
>transcriptional regulator
MNKSELIERIVDQQEQLSVRDVELAVKTMLEHMTQVLSSGERIEIRGFGSFSLHYRAPRLGRNPKTGEAVELEGKYVPHFKPGKELRDRVND
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|