Pseudomonas caeni DSM 24390, H591_RS0106635
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas caeni DSM 24390 H591DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTAATCGCATTATCAGCGGTTTGTCTTTAGGTGTTTTAGTGGTTGAGGCCAGCCCATCCAGTGGCTCGCTGATTACCGCACGCTTAGCTGCTGAGCAAGG TCGTGAAGTTTACGCCATCCCAGGTTCCATTCATGCGCCCGGCGCGCGTGGCTGTCATCAGTTGATTCGTGATGGTGCAACGCTAATTGAAACGGTAGGG GATATTTTAGAATCATTACAAGGTTGGCAGCTAACAGCGCCAGCCGAGCAGTCAGCCGTCCAGCAAAGTCTAGCCCTGCATCATCCACTGCTTGATTTGT TAAAGGTACAACCATTGGATGTTGATGCGTTGGTTGATTTGAGTGAGTTGCCGTTGTCAGAAGTGCTAGCGCTGCTGACTGACTTTGAAATTGCTGGCAA TGTCAGTCGCGAGGGCAGTTTATGGCTGTATCGTAACGCTGGACAGGTTTAAGATAGGCGCTTGATTGATTCAGCAATAAAATACTTACGAGTAGATTTG
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| DNA Sequence for Gene |
>H591_RS0106635
ATGACCAGTGCTTGGCAAATTCAACAGATTGCGCAAAAAGTTCGTGACGGTGCTGTGATTGCTTACCCTACCGAAGCCGTTTGGGGTTTGGGTTGTGATC CGTTTAATGCCACCGCGGTCGCGCGTCTGTTAGCGCTAAAAGAGCGGCCTGTGCATAAAGGTTTGATTTTGGTTGCGGCAGACATTGAGCAGTTTGCTGA ATTGTTGGAGGGCTTATCGGCAAGCGAGCTGGCGCAGCTACAAAAGAGTTGGCCAGGCCCCAATACTTGGCTGGTGCCACATCATAACCGAGTGCCTGAA TGGATTACTGGCGCGCATGACAGTGTGGCGATTCGCGTCAGTGCGCATCCTTTGGTGGCAGAGCTGTGTCGGTTAACTGGACCATTGGTGTCGACTTCCG CAAATCCCAGCGGGCTTTTACCAGCGAAAAGCCGTTTACGCATTGAGCAGTATTTTCATGGTCAGTTGGATGCGGTATTAAGTGGTGAGCTCGGCCGGAG CAGCAATCCAAGCACTATCCGCGATTTGCGCACAGGACAAGTATTGCGCTCGGCCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTTTATAGCTGCGCGCGCAGTTGTTGCAGTACCGGAGCTGGATTAGGACGCACGCCAGTCCACAGGTAAAAGGCTTCTGCCGCTTGCTCAACCAGCATG CCTAAACCATCCAAAGTGCGCGCCGCATCTTGGCTTTGTGCCCACTGATTAAAGATGGTGGTCTGTCTGCCGTACATCATGTCGTAGCAAATCGTGTGCT TGGCTTTAATCAAAGTGCTGGCCAAGGGCGGTAACTCGCCGCTGAGACTGGCGGAGGTACCATTGATAATGATATCCACCGGGGCATCAATCCAATCGTA ACCACAAGCAGTCATTGGGCCTAAATCAGCAAATTCGCGGGCCAATTGCTCCGCTTTCTCAACGGTGCGGTTAGCAATACAAACCTCGGCCGGATGCTGC GCCAGTAAAGGCTCTAAGACACCGCGCACAGCACCGCCGGCACCTAGAATTAAGATGTTTTTCTTCGCTAACTCAACCTGGTTATTGAGCAAGTCATTAA
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| Amino Acid Sequence |
>tRNA threonylcarbamoyladenosine biosynthesis protein RimN
MTSAWQIQQIAQKVRDGAVIAYPTEAVWGLGCDPFNATAVARLLALKERPVHKGLILVAADIEQFAELLEGLSASELAQLQKSWPGPNTWLVPHHNRVPE WITGAHDSVAIRVSAHPLVAELCRLTGPLVSTSANPSGLLPAKSRLRIEQYFHGQLDAVLSGELGRSSNPSTIRDLRTGQVLRSA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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