Pseudomonas caeni DSM 24390, H591_RS0105050
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas caeni DSM 24390 H591DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTGACGCGCATACCTTGGACTGATCAAGACATCGCGCGTTTTACGCGTTTAGTTCAAGACTCTGTCGGCTTTAATGCCAGTCGTGGTGACAGTGTTAGC GTAATCAATGCGCCCTTTGCGCCTTTGCTAACGGAAGAAATTGTTGAAATTCCATTTTATACACAGCCTTGGTTCTGGGATATTGTTAAACAAGTGCTTG GTGTGTTGTTTATCTTGGTCTTGGTGTTTGGAGTGCTGCGTCCTTTACTGCGTAATGTCGTCGGTGGCGGGAAGTCCAAAGAGCTGACTGCGCGAGATCG CTTAGGTGATGCTGAACTGGGTGACATGGATGAGCTCGGCTCAGGCTTAGCAGATGATCGCGTTAGTCTAGGTGGGCCGCAAAGCATTCTATTACCGAGC CCTAGTGAAGGTTACGATGCCCAGCTTAATGCTATTAAAAGTCTAGTTGCTGAAGATCCAGGTCGTGTTGCACAGGTTGTGAGAGATTGGATTAACGCTG
|
|
| DNA Sequence for Gene |
>H591_RS0105050
ATGAGTGATAATCGTATGAGCACTAAACTAAATAAAATCGATAAAGCTGCAATTCTGCTGTTGTCGCTCGGTGAGACCGATGCTGCACAAGTGCTGCAGC ACATGGGCCCCAAAGAAGTGCAGCGGGTTGGCTCGGCGATGGCGCAAATGCGTAACGTGCATCGTGAGCAAGTTGAACAGGTGATGAGTGAATTTGTTGA AGTGGTCAGCGATCAAACGGGTCTAGGTGTAGGTGCTGACGGCTATATTCGCAAAATGTTGACCCAGGCGCTCGGTGAAGATAAAGCGGGCAGTCTGATT GACCGGATTTTACTGGGTGGCAATACCAGCGGTTTAGACAGTTTAAAGTGGATGGAGCCGCGTGCTGTAGCGGATGTAATTCGCTATGAGCATCCGCAAA TTCAGGCCATTGTCGTGGCTTATTTGGATCCTGATCAAGCCGGAGAAGTGCTGGGTCATTTTGATCATAAAGTGCGCTTAGATATCGTTTTGCGGGTGTC TTCGCTGAATACGATTCAGCCGGCTGCACTGAAAGAGTTGAACACCATTCTTGAAAAGCAGTTTTCTGGTAATTCTAATACCTCGCGCACGACTATGGGC GGGGTCAAGCGTGCAGCGGATATCATGAACTTCTTAGACAGTTCTATTGAAGGGCCGCTACTGGATGCAATTCGTGAGCTTGACCAAGATTTGTCTGGAA AAATTGAAGACTTAATGTTCGTCTTTGATAATTTAGCGGATGTCGATGATCGTGGTATTCAATCATTGATGCGTGAAGTATCTTCTGATGTACTGGTCTT GGCGCTCAAGGGTGCAGATGAAGCCATTAAAGAAAAAATCTTTAAGAATATGTCCAAACGGGCTTCTGAATTGTTGCGTGATGACCTTGAGGCTAAGGGT CCAGTGCGTATCAGCGAAGTTGAATCTGCGCAAAAAGAAATCCTTACCATTGCCCGACGTATGGCGGAAGCTGGCGAAATTGTACTGGGTGGTAAGGGTG GCGAAGAAATGGTGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ATATGCCAGATAAAAAAACAAGCAGTGAGCTGATTCGTGTGCAAGCAGGCGATGTCCTCAATGTCTGGGATTTACCCAGCTTTGATGACCCTTCACACAA AGAAGAGCCGCTCACGGCGGAGCCTGACGTTGTCGATGAGGCTGTAGTGCAGGTAGAGGACGTCACAATCGAGGATGTCCAACCCTTAACCCTCGAAGAC GTAGAAGCTGTGCGTCAGGATGCTTGGAATGAAGGTTTTAGCGCTGGAGAAAAAGACGGTTTTCATGCGGGTCAATTAAAAGCTGCGCAAGAAGCACAAG AAGTTTTGAGTGCTAAGGTTGCTGGATTGGATAGTATTATGCAGCAGTTTTTTGATCCGATTGGGCAACAAGACCAACAGTTAGAAGTTGCTATGCTCGA CTTGGTAACTCGTATCAGCGAGCAGGTAATTCAGCGAGAATTACAACTAGATTCCAGTCAGATTAAACAAGTTGTGCGAGAGTCTTTAAAATTGCTTCCG
|
|
| Amino Acid Sequence |
>flagellar motor switch protein FliG
MSDNRMSTKLNKIDKAAILLLSLGETDAAQVLQHMGPKEVQRVGSAMAQMRNVHREQVEQVMSEFVEVVSDQTGLGVGADGYIRKMLTQALGEDKAGSLI DRILLGGNTSGLDSLKWMEPRAVADVIRYEHPQIQAIVVAYLDPDQAGEVLGHFDHKVRLDIVLRVSSLNTIQPAALKELNTILEKQFSGNSNTSRTTMG GVKRAADIMNFLDSSIEGPLLDAIRELDQDLSGKIEDLMFVFDNLADVDDRGIQSLMREVSSDVLVLALKGADEAIKEKIFKNMSKRASELLRDDLEAKG PVRISEVESAQKEILTIARRMAEAGEIVLGGKGGEEMV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|