Pseudomonas caeni DSM 24390, H591_RS0101315
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas caeni DSM 24390 H591DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGGCAGGCATGGTCATACCTATTTTATTTGCACGGGAATATCCCGGCCTGTCCATATTAGGAGCCCATCATGGCACTTAGCGTTGAAGATAAAGCCCAG ATCGTAAATGACTACAAGCAAGCTGAAGGTGATACAGGTTCTCCAGAAGTGCAAGTTGCACTTTTGACCTTTAACATCAACAAGCTGCAAGGTCACTTTA AAGACAATAAAAAAGATCACCACTCCCGTCGTGGTTTGATCCGCATGGTAAACCAGCGTCGTAAGTTGCTGGATTACCTTAAAGGTAAAGATCTAGGTCG TTACACGACTTTAATCGGTCGTCTGGGATTACGTCGTTAAGACGTTACCCATAACGTGAAGCTGGGAGTCTGGGGCATCATGCGTAAAAATATTTACGCG ATGCTTTGGGCTTCCAGCTTTTCGCTTTTTAGGAGATAAATGGGCCGATACCCATGCTCTTAGCTGTTTCCCCCAAGTCAACAAAGAGAAGGAAAATACC
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| DNA Sequence for Gene |
>H591_RS0101315
GTGAATCCGGTTATTAAAACGTTCCAATTTGGTGAATCCACCATTACTTTAGAAACAGGCCGTATTGCACGCCAAGCCACAGGTGCAGTACTGGTTAGCG TCAATAATGATGTCACTGTGTTGTGTACTGTCGTTGGTGCTAAGAAAGCCGACCCAAGCAAAGACTTTTTCCCTTTATCTGTGCATTATCAAGAAAAAAC CTATGCTGCAGGTAAAATTCCAGGTGGTTTCTTCAAGCGTGAAGCGCGTCCATCCGAAAAAGAAACCCTGACTTCGCGATTGATCGACCGTCCGATTCGT CCGCTGTTCCCAGAAGGTTTCAATAACGAAGTACAGGTTGTTTGTACCGTTGTTTCAACCAGCAAAAAAACTGATCCAGACATCGCCGCAATGATCGGTA CCTCTGCCGCATTAGCTATTTCTGGGATCCCATTTAATGGTCCAGTCGGTGCTGCGCGCGTTGCCTTCCATCCAGAAACGGGCTACTTAATTAACCCAAC CTATGAGCAGCAGGAAGCGTCCTGCCTCGACATGGTGGTTGCTGGTACGCAAGATGCTGTATTGATGGTTGAGTCTGAAGCACAAGAGCTGACTGAAGAT CAAATGCTGGGTGCAGTACTGTTTGCGCACGAAGAGTTCCAAGTCGTGATCAATGCTATTAAAGAACTGGCCGCAGAAGCAGGAAAGCCAACATGGGATT GGCAGCCAGAAGCTGAAAATACAGCATTGTCAACGGCGATTCGCAGCCAGTTCGGTGCGGCAATTTCAGAAGCTTACACCATCACCATTAAACTGGATCG CTATGCCCGTTTAGGCGAGATCCGTGAGCAAGCGGTTGCGGCGCTGGCCAGCCAAGTCGAGGGTGAAGGCCCAACGGCTGCAGAAGTTAAAGAAGCCTTT GGTGAAATTGAATACCGTATCGTGCGTGAGAATATCGTTAACGGTAAACCACGTATTGATGGTCGCGACAATAGCACAGTGCGTCCACTGGCGATTGAAG TGGGCGTATTGGATAAAACCCACGGCTCAGCCTTGTTCACCCGTGGTGAAACCCAAGCTTTAGTGGTTGCCACTTTGGGTACTGCTCGTGATGCACAGTT GCTTGACACCTTAGAGGGTGAAAAACGTGATTCATTTATGCTGCATTACAACTTCCCGCCTTATTCTGTAGGTGAGTGTGGTCGTATGGGCGCAACCGGT CGTCGTGAGATCGGGCACGGTCGTTTAGCGCGTCGTAGTATCGCTGCGATGCTACCTAAGGCGGATGATTTCCCGTACACCATCCGTGTGGTATCAGAAA TCACTGAATCCAACGGTTCAAGCTCAATGGCTTCAGTCTGTGGCGCTTCATTAGCACTGATGGACGCTGGCGTACCAATGCAAGCCCCAGTGGCTGGTAT TGCCATGGGGTTGGTTAAAGAGGGCGATAAATTTGCTGTTTTAACCGATATTTTAGGTGACGAAGATCACTTAGGTGACATGGACTTTAAAGTAGCAGGT ACTGCAAAAGGCGTTACTGCACTGCAAATGGACATTAAAATCCAAGGCATCACCGAAGAAATCATGGAGATTGCGCTAAACCAAGCGCACGCAGCGCGTA TCAATATCCTTGAGCAAATGAATCAAGTATTGCCTGTTTCACGCACTGAGCTGTCGGACAATGCGCCGACTATGATTGCGATGAAAATTGATGCGGACAA AATCCGTGACGTGATTGGTAAAGGTGGTGCAACCATCCGTGCCATCTGTGAAGAAACTGAAGCATCCATTGATATCGAAGATGACGGTTCAATTAAAATC TTTGGTTCTACTAAAGAGGCTGCAGAAGCTGCACGTGAGCGCGTTCTGAGCATCACTGCAGAAGCTGAAATTGGTAAGATCTACCATGGTAAAGTTGAGC GTATCGTTGATTTTGGTGCGTTTATTAACATCCTGCCAGGTAAAGACGGCTTAGTGCATATCTCTATGTTGAGTGATGCTCGTGTTGAGAAAGTCACCGA TATATTGACTGAAGGCGAAATGGTTGACGTTGTGGTTCTGGACGTTGATAACCGTGGTCGTATCAAGCTGTCGATTAAAGATGTTGCTGCTGCAAAGCTT GAGAATGCGCCACAAGCCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGGTTGTGTTGAAAAAAGCCGCCTTGTGCGGCTTTTTTTTATAGAAAAAATTGTCAATCACGGCTTTCAACGCCGGTGAGCCAGTGTGCCGTTATGGG GCGGTCTTGCTCTTTAGGGCTGTAAATAGTGAGCCGCAAGACTTCAGGGGTGACCCTAAAGTGCCTTTAAAGCTAGAATGTGTGTTTAATTTTTAACTCA GCTAAGCAGTCGCATGGCACTGATCGTGTGGCGTGTATCTTTGTGTGCTGTAGGGCAATCGCCGAGGACTTTTTTATGGGTGTTTCCACACCGACATTAG TGACATTTGCAGTGTATATCGCCTTAATGTTGGGCATCGGTTTGTGGGCTTGGCGTTCAACCAAGAACTTCTCGGATTACATCTTGGGTGGGCGCAGTTT AGGTAGTTTTGTTACGGCGATGTCGGCTGGTGCATCCGATATGAGCGGCTGGTTGTTGATGGGGTTGCCGGGCGCTATCTTTGTCGCGGGTTTATCTGAG
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| Amino Acid Sequence |
>polynucleotide phosphorylase/polyadenylase
MNPVIKTFQFGESTITLETGRIARQATGAVLVSVNNDVTVLCTVVGAKKADPSKDFFPLSVHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIR PLFPEGFNNEVQVVCTVVSTSKKTDPDIAAMIGTSAALAISGIPFNGPVGAARVAFHPETGYLINPTYEQQEASCLDMVVAGTQDAVLMVESEAQELTED QMLGAVLFAHEEFQVVINAIKELAAEAGKPTWDWQPEAENTALSTAIRSQFGAAISEAYTITIKLDRYARLGEIREQAVAALASQVEGEGPTAAEVKEAF GEIEYRIVRENIVNGKPRIDGRDNSTVRPLAIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKRDSFMLHYNFPPYSVGECGRMGATG RREIGHGRLARRSIAAMLPKADDFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMQAPVAGIAMGLVKEGDKFAVLTDILGDEDHLGDMDFKVAG TAKGVTALQMDIKIQGITEEIMEIALNQAHAARINILEQMNQVLPVSRTELSDNAPTMIAMKIDADKIRDVIGKGGATIRAICEETEASIDIEDDGSIKI FGSTKEAAEAARERVLSITAEAEIGKIYHGKVERIVDFGAFINILPGKDGLVHISMLSDARVEKVTDILTEGEMVDVVVLDVDNRGRIKLSIKDVAAAKL ENAPQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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