Pseudomonas sp. URIL14HWK12:I4, H025_RS0123520
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I4 H025DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGCTGTGCGGCGGCGAACGTCTGACTGCCGGTGACTTCGCCAAGGGCGCCTTCGTGGCCCCGACCGTGTTCACCGACTGCACCGACGACATGACCATCG TCAAGGAAGAAATCTTCGGCCCGGTGATGAGCATCCTCACCTACGAAACCGAAGAAGAAGTGATCCGTCGTGCCAACGACACCGAGTACGGCCTGGCCGC CGGTGTGTGCACCAACGACATCACCCGCGCCCACCGCATCATCCACAAGCTGGAAGCCGGTATCTGCTGGATCAACGCCTGGGGCGAATCGCCGGCCGAA ATGCCGGTCGGTGGCTACAAGCAATCGGGCGTCGGCCGTGAGAACGGCGTCAGCTCGCTGGCTCAATACACCCGCATCAAGTCGGTCCAGGTTGAGCTGG GCGGCTACAACTCGGTTTTCTAAACCCTGTATAGCCCCGCCCGTGCCGCTGCGCACGGGCGTTCCCGCTCCCTGATCACCGCCAACACGAGGGTACTTTC
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| DNA Sequence for Gene |
>H025_RS0123520
ATGTCCCAAGAATTCGATTACATCATCGTCGGCGCAGGCTCCGCCGGTAACACCCTGGCGACCCGCCTGACCGAAGACGCCGGCGTCACCGTACTGCTGC TGGAAGCCGGTGGCCCAGACTACCGCTTCGACTTCCGCACCCAGATGCCAGCCGCCCTGGCTTTCCCGCTGCAGGGCCGCCGCTACAACTGGGCCTACGA GACCGACCCGGAGCCGTACATGGACGGCCGCCGCATGGAATGTGGCCGCGGCAAGGGCCTGGGCGGCTCGTCGCTGATCAACGGCATGTGCTACATCCGC GGTAACGCCATGGACTTCGACGGCTGGGCAGAACTGCCAGGCCTGGAAGACTGGACCTACCTGGACTGCCTGCCGTACTTCCGTAAAGCCGAAACCCGCG ACATCGGCCCGAACGACTATCACGGCGGCGAAGGCCCGGTCAGCGTGACCACGCCAAAAGCGGGCAACAACCCGCTGTTCCACGCCATGATCGAAGCCGG CGTGCAGGCCGGTTACCCGCGCACCGAAGACCTCAACGGCTACCAGCAGGAAGGCTTCGGTCCCATGGACCGTACCGTGACCAAGAACGGCCGCCGTTCC AGCACCGCCCGTGGCTACCTGGACCAGGCCAAGAAGCGCCCGAACCTGACCATCGTCACCCACGCCCTGAGTGACCGCGTGCTGTTCGACGGCAAGCGCG CCGTTGGCGTGACCTACCTGGTCGGCGACAGCGAAGAGCGCGTTGAAGCCCGTGCGCGCAAGGAAGTGATCGTCAGCTCCGGCGCCATCGCTTCGCCGCA ACTGCTGCAACGTTCCGGCGTCGGCCCGCGTGCCCTGCTGGAAAGCCTCGACATCCCGGTGGTGCACGACCTGCCGGGCGTTGGCGAAAACCTGCAGGAC CACCTGGAGCTATACCTGCAGTACGCCTGCACCCAGCCGGTGTCGCTGTACCCCTCGCTGCTGTGGTGGAACCAGCCGGCCATCGGTGCCGAGTGGATGT TCAACGGCACCGGCATCGGCGCCAGCAACCAGTTCGAGGCTGGCGGTTTCATCCGTACCCGCCCTGAATTCAAATGGCCGAACATTCAGTACCACTTCCT GCCAGTGGCCATTAACTACAACGGCTCCAATGGCGTGAAGGAACACGGTTTCCAGGCGCACATGGGTTCCATGCGCTCCCCTGCCCGCGGCCGCATCCAG GTCAAATCGAAGGACCCGCGCCAACACCCGAGCATCCTGTTCAATTACATGTCCACCGAGCAGGACTGGCAGGAATTCCGTGACGGCATCCGCCTGACCC GTGAAATCATGGCCCAGCCGGCGCTGGACCCGTACCGTGGCCGCGAAATCAGCCCGGGCGCCCACGTGCAAACCGACGAAGAACTGGACAAGTTCATCCG CGAGCACGCCGAAACTGCCTTCCACCCGTCCTGCTCGTGCAAGATGGGCACCGATGACATGGCAGTGGTCGACGGCGAAGGCCGTGTGCACGGCATGAAG GGCCTGCGTGTGGTCGATGCGTCGATCATGCCGCTGATCATCACCGGCAACCTCAACGCCACCACGATCATGATCGCCGAGAAAATCTCGGACAAGATCC GTGGACGCAAGCCGCTGCCGCGCAGCACCGCCAAGTACTACGTGGCGGGCGATGCACCGGTGAAGGGCAAGCCGATGCGTGAAGTGAAGCAAGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGCAGTACTAATGGGGCTGCTTTGCAGCCCCAAATCACTTGATTGGCTGACATCAAAGATGTGTCACGTCGGTACCGCAAAAAACGTACGCATCAACCC GTCATCCTCCACACCCAATCGTTCAGCCATCACCTGACGGTCGAACAAGGCCCCCGTGCGCATCTCACGCACCCTCGCCCCCTCCGGCGCCCGCGCCAGT GCCTTCAGGCACACTTCCATGAAGCGATGATTGCCTCCCTTCACCGGCGTCAGCTTTTCAACCTGCAAATAACGCCCCGGCATCATCAGCGACTCCGCCT CGTCCGGACGCCTTGAGAACGGCCCGATCGGCATTGCCTGCACGTTCTCACCCGGCTCCAGCACATACACCAACGCATTGTCGCCAAAAGCCCCCTTGCC GCTCGCCTGGGTCTGCGGGTCGTTGAACACCTCCCACAGGGCATAAGGGTTTTCTGTGAACGACGTGAAATCGCTGGTCACCAACACGTCGCCCACTGCA
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| Amino Acid Sequence |
>choline dehydrogenase
MSQEFDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNWAYETDPEPYMDGRRMECGRGKGLGGSSLINGMCYIR GNAMDFDGWAELPGLEDWTYLDCLPYFRKAETRDIGPNDYHGGEGPVSVTTPKAGNNPLFHAMIEAGVQAGYPRTEDLNGYQQEGFGPMDRTVTKNGRRS STARGYLDQAKKRPNLTIVTHALSDRVLFDGKRAVGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQD HLELYLQYACTQPVSLYPSLLWWNQPAIGAEWMFNGTGIGASNQFEAGGFIRTRPEFKWPNIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPARGRIQ VKSKDPRQHPSILFNYMSTEQDWQEFRDGIRLTREIMAQPALDPYRGREISPGAHVQTDEELDKFIREHAETAFHPSCSCKMGTDDMAVVDGEGRVHGMK GLRVVDASIMPLIITGNLNATTIMIAEKISDKIRGRKPLPRSTAKYYVAGDAPVKGKPMREVKQG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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