Pseudomonas sp. URIL14HWK12:I4, H025_RS0114930
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I4 H025DRAFT_scaffold00010.10_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGCACAACAGACACGCGTAGGCGTGTTGCAGGCCAGCGTCGATGTACGCCCGCAGCGCCATCCTGACCGGGTGCTGCACGTGCAGGCCGGGCAGCAAAC GCGCTTTGACCAGCAAGACTTCACCCTTGCCCATACCCTGCCCGCCGACTCCACGGCCTGGCTACAGGGCATGCTGAGCGTGAACGACTGGCGCCTGGGC GACTTCATCGAAGAGCTGGGCCGCTATCGGCCGGGCGTGCTGCGCTGCGCCTCATCAATCCAGGCCATGAGCATTTCCGGCGCATTCCGTATCGACGATA CCGATATTGCGCTGGCCAACCTGCCGAAAACCCTGCCTGTAAAGGTGCGCTACCTCAGCCGCTACTGGGTGAATGTGGAACCCGCCTGAACGGCTGGTGA AAAAACTTTCGCTCAAATCTTGCTGATTTTGATTCTCGTCCGTCCCTGACACAAGCCGCGACGACAGCGACTTTCTGCCATAACTCGGAAGGATCACCCA
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| DNA Sequence for Gene |
>H025_RS0114930
ATGCCTCACCTGCACCCCACCCCTACCACGCTGAGCCAGGCCGTGCGCCTGGTGCTGTTCGGCATGTCCCTGGCCAGCGCGCCAGCCTTGCTGCTGATGC CTGCCCAGGCCATGGCCCAGAGCCAGACTGCCTACCACGTCGCGGCTGGCACGCTGGGCAACGCCATCACCCAGTTTGGCGTGCAGGCGGGTGTGACCAT TTCGTTCGACACTGAGCAAACGCGCAACCTGAACAGCGCAGGCCTGGAAGGCAGCTACAGCATCGAGGAAGGGCTGGTGCGGCTGCTGAGCAACAGTGGC TTGCAGGCACAACGCCAGGGTAATGGCGGCTATGTGCTGGTGCCTTCAGACAACGGTTCGGCGATGGAACTGGGGCCACTGAACATCGATGCCAACCGGC TGGATGCGACCAGCGAAGGCACTCAGTCTTACACCGCCCGCGCCGTGACCATAGGCAAGGGTGTGCACACGCTGAAGGAAACCCCGCAGTCGGTCACCGT CATGACCCGCAAGATGCTCGACGACCAGAACCTCAACACCCTGGAACAGGTGCTGGACAAGACCCCGGGCATCACCGTGTACGACTCGCCCATGGGCGGC AAGTATTTCTATTCCCGCGGTTTCAACCTGGACGGCCAGTACCAGTACGACGGCGTGCCGCTGGATGTGGGTGGCAACTACGTGCAGGCCAACAGCTTTT CCAGCGACATGGCCTTCTATGACCGCGTCGAAATTCTCAAGGGTGCGGCTGGCATGATGAAGGGCTCCGGTTCCTCCGCCGGTGGCGTCAACTTCGTGCG CAAACGCGGCCAGGAAAAAGCCGCTACCACCGTCACCCTGTCTGCCGGTAGCTGGGACAACTACCGCGGCCAGGTCGATGTGGGCGGCCCGCTCAACGAA TCCGGCACGGTGCGTGGCCGGGCCGTGGCGGCGCTGCAGGACCGTCAGTACTTCTATGACATTGCCAAGCGCCAGGACCAGATTCTGTACGGCGCCATCG ACTGGGATGTCAGCCCCGACACTACGCTGGGCTTTGGCCTGGCCTATGAGGATGTCGATGCCACACCGTGCTATGCCGGTGTGCCACGCTACGCCGATGG CAGTGACCTGAAGCTGTCGCGTTCCACCTGCCTGGGGGTCAGCTGGAACGACCTGCAAAGCCAGCGCATTACCGGCTTTGCCGACCTCAAGCACCACTTC AACGATGACTGGACGCTGAACTTTGCCTCGATCTACACCCACAACAACCAGAACATCGAATACGCCTACTCCGAAGGCACGGTACCGGTCGGCGCCAGCA CCGGCAGCATGAGCGTGCGAGCCGGTCGTTTCGACTACGACCAGGACGACTATGGCTTCGATACCTATGTCGATGGCAAATTCGAGGCGTTCGGCCTGCA GCACGAACTGATCATCGGTGCCAACGCCAGCCGGCAGAAAACCCATGACTACTTCGCGCTGATGCTGCTGGACGGCAAGCAGAATCCATTCGACCCGTCT GCACATTTCCCACACCCGTCCAAAGCCGATTACCTGGTCAACCCGACCCGCGGTGGCAGCGTGCCAACCGACTCCACCACCACGCAATACGGCACTTACG CCAACCTGCGCCTGAAGCTGGCAGAGCCGCTGACCCTGGTGCTGGGTGCACGGGTCAGCTGGTACCGCAACAAGAGCGACTCCTATACCCAGTACTATGA TTACTGGGTGAATAACCGCAGCGAAGAAAACGGCCAGGTCACGCCGTTCGCCGCCGTGCTGTACGACCTGAACAACCAGTGGACCGCCTACGCCAGCTAC GCCGACATCTTCCAGCCGCAAAGCGACAAAGTGGACGCCGAGCGGCAGTCACTCCAGCCCAAGACCGGTGCCAACTACGAGATTGGCATCAAGGGCGAGC TGCTTGAGGGTGCCCTGAATACTTCGTTCAACCTGTTCCGCACCGTCGAGAATCACCGCGCAGAAAGCGACTACATCGAGACCTGTCCGTCAGGCGACGG CTATTGCTACACCGACAGCGGCAAGGTGCGTGCGCAGGGCTTCGAAGCCGAGATCAGCGGCTCGCCCATCGAGCGCCTGCAATTGTTGGCAGGCTACACC TACACCCAGACCAAGTACCTGAAGACCATCGAGGACACCGACCCCACCGAGCTGACCTTCACCTCCAGCTTCATCCCGCGGCACATGCTCAAGGTGTGGG GTGACTACCAACTGGGCGGCGCCTTGGAGCGCTGGACCTTGGGTACCGGTTTCAACAGCCAGAGCGAGAACTTCCGTACCACCGGCAAGACCCGCGTCGA GCAGCCTGGCTACACCGTGTGGAACGGCCGCGTGCAGTACCGTCTGGATCAGAACTGGACCGTCGCCCTCAACGGCAACAACCTGTTCGACAAAAAGTAC TACGCCACTATCGGCGCGCCGGGCTGGGGCAACTTCTATGGCGAACCGCGTAACTTCATGGTGACGTTGCAAGGGGCGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATGCATCAGGGCCGCTTTGCGGCCCTTTTGATTTGCCAGGTCGCCTACAACAAGCCTCTCAGGTTCGGTCTCCCGCCGACTTTCCGTAGCGTGACGAAT GCCCCTTCGTGGAAGTGATAACCGGTGAAAACACCTACCGAAGTCAATACCACCGCATTTTCAGAAAACTCCTACGCGCGTATCGGAAGCGCAAAGCTCC AGCAAGAAGTGATTCCTCGCTAGGGTCCAGGTTCGGGTCGAATGCAGCGCGTTGCATGCATTTGCTGATCACTCCTGCTCACTGGAGCACATCCATGGAT TCATTGAACGAAGCCCTAGAATTGTGCCGGCGCATCACCACCGGCTACCGTCCCGCCCTGCGCAACAGCCCGGTCGCCGACTGCACCCGCCGCTTCGAGC TGCTGCCCCTGCGCTACGCCGCTGTCGGCGGCAACCCGGCACAACGCGCCCGCCTGCCCAAACTGCCGGGTTATCTCAGCCCGTTCCAGGACGTAGGCGA
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| Amino Acid Sequence |
>TonB-dependent receptor
MPHLHPTPTTLSQAVRLVLFGMSLASAPALLLMPAQAMAQSQTAYHVAAGTLGNAITQFGVQAGVTISFDTEQTRNLNSAGLEGSYSIEEGLVRLLSNSG LQAQRQGNGGYVLVPSDNGSAMELGPLNIDANRLDATSEGTQSYTARAVTIGKGVHTLKETPQSVTVMTRKMLDDQNLNTLEQVLDKTPGITVYDSPMGG KYFYSRGFNLDGQYQYDGVPLDVGGNYVQANSFSSDMAFYDRVEILKGAAGMMKGSGSSAGGVNFVRKRGQEKAATTVTLSAGSWDNYRGQVDVGGPLNE SGTVRGRAVAALQDRQYFYDIAKRQDQILYGAIDWDVSPDTTLGFGLAYEDVDATPCYAGVPRYADGSDLKLSRSTCLGVSWNDLQSQRITGFADLKHHF NDDWTLNFASIYTHNNQNIEYAYSEGTVPVGASTGSMSVRAGRFDYDQDDYGFDTYVDGKFEAFGLQHELIIGANASRQKTHDYFALMLLDGKQNPFDPS AHFPHPSKADYLVNPTRGGSVPTDSTTTQYGTYANLRLKLAEPLTLVLGARVSWYRNKSDSYTQYYDYWVNNRSEENGQVTPFAAVLYDLNNQWTAYASY ADIFQPQSDKVDAERQSLQPKTGANYEIGIKGELLEGALNTSFNLFRTVENHRAESDYIETCPSGDGYCYTDSGKVRAQGFEAEISGSPIERLQLLAGYT YTQTKYLKTIEDTDPTELTFTSSFIPRHMLKVWGDYQLGGALERWTLGTGFNSQSENFRTTGKTRVEQPGYTVWNGRVQYRLDQNWTVALNGNNLFDKKY YATIGAPGWGNFYGEPRNFMVTLQGAF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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