Pseudomonas sp. URIL14HWK12:I4, H025_RS0113945
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I4 H025DRAFT_scaffold00009.9_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCAAGCTGGCAGTGTTCGACGTGGACGGCGTGCTCACCGACGGGCGCCTGTACTTTCTCGAAGACGGCAGCGAATTCAAGACCTTCAACACCCTCGACG GCCAGGGCATCAAGATGCTCATGAACGCGGGCGTGACCACCGCGATCATCAGCGGCCGCAAGACCCCGGTGGTCGAGCGCCGCGCCAGAAACCTCGGCAT CCCGCACCTGTATCAGGGCCGAGAGGACAAATTGGTCGTGCTTGACGGCCTGCTCGCCGAACTGGGCCTAAGCTATGATCAAGTAGCCTACCTGGGCGAC GACCTGCCGGACCTGCCGGTCATTCGCCGGGTAGCATTGGGCATGGCCGTGGCCAACGCCGCGCCGTTCGTTCGCCAGCACGCCCACGGCGTGACCCAGG CACGCGGCGGCGAGGGAGCGGCCCGTGAATTCTGCGAACTGATCATGCAGGCCCAGGGTACCCTGGACGCTGCCAACGCCAACTACCTGTAAGGCTGCCC
|
|
| DNA Sequence for Gene |
>H025_RS0113945
ATGTTCAGCAAGAAAGCCCGCAATGCTGCGCTGCTCGCAGTGATCGCTGCCCTGCTGGTGGCGATCGGCTACTGGAATGTCAGCCCGGAAAGCTTCCTCG ACAAGCCGGTGGCCCAGGTCGACGAAAGCGCTATCGACTACTATGCGATCAACGCCCACAGCGTGCAGTTTCTGCCCGACGGCAAACTGCAGTACGAGAT GACCGCCGACAAGGTCGAACACCTCAAGGCCAGTGAAATCACCCTGCTGACCACGCCGGACCTGCACATGTACCGCGGCACCGAATACCCGTGGCACGTG CAGAGCACCCGCGCCGAGGTCAACCCGGACGGTACCGAGGTCGAGCTGATCGACAAGGTACGGGTTGCTCGCACCGACGAAAAGCAGCGCGAAACCATCA TTACCAGCTCACGCATGACCGTGTTCCCGCAGAAGCAATATGCGCAGACCGAGCAAGCCGTTAGAATCGACGGCGCCGGTGGCACTACTACGGGCAAAGG AATGAAAGCGTATTTGAAAGAAGGCAAGATGGACTTGCTCTCTAACGTAAGAGGACAGTATGAGGCTCGTTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AACCCTCCCCCTTTTGCTCAGCCTGAGCGCAGCACTGGGAAGCGCGAGCGCCCTCGCCCTGCCGAACGACCGTGACCAGCCGATCCGTATCCAGGCCGAC AACGCCCACCTGGACGACAAGCAAGGCGTGGCCACCTACACCGGCGACGTGATCATCACCCAGGGTTCGATGATGATCAAAGGCAACACCGTGACCATCA CCCGTTCCGCCTCTGGCGACATCGACGTGGTGACCTCGGTGGGCAACCTGGCCTACTTCGAGCAGCAGCAGAGCGCGGCCAAGCCGGACAAGATGAAAGG CTGGGGCGTTACCATCCAGTACCAGTCGCAGAAGGACCTGGTGATCCTCACCGACCGTGCCAAGGTCGAGAACGAGGGCAACACCACCGAAGGCGAGAAA ATCGTCTACAACACCCAGACCCAGGTGGCGACTGCGGGTCGCGGTGGCAACGTGACCACACCGCGTCAGCGTATCGACATGGTGATCCAGCCCAAGAAGA
|
|
| Amino Acid Sequence |
>lipopolysaccharide ABC transporter permease LptC
MFSKKARNAALLAVIAALLVAIGYWNVSPESFLDKPVAQVDESAIDYYAINAHSVQFLPDGKLQYEMTADKVEHLKASEITLLTTPDLHMYRGTEYPWHV QSTRAEVNPDGTEVELIDKVRVARTDEKQRETIITSSRMTVFPQKQYAQTEQAVRIDGAGGTTTGKGMKAYLKEGKMDLLSNVRGQYEAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|