Pseudomonas sp. URIL14HWK12:I4, H025_RS0111590

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003911 DNA ligase (NAD+) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00532
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.150.20:FF:000006 DNA ligase - - 515 593 4.4E-23
Hamap MF_01588 DNA ligase [ligA]. IPR001679 NAD-dependent DNA ligase 1 769 52.550903
NCBIfam TIGR00575 JCVI: DNA ligase (NAD(+)) LigA IPR001679 NAD-dependent DNA ligase 10 604 0.0
Gene3D G3DSA:1.10.150.20 - - - 515 595 7.4E-24
FunFam G3DSA:3.30.470.30:FF:000001 DNA ligase - - 64 313 5.1E-110
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 315 388 8.1E-34
Gene3D G3DSA:1.10.150.20 - - - 608 685 4.3E-7
SMART SM00292 BRCT_7 IPR001357 BRCT domain 695 772 2.7E-8
Gene3D G3DSA:1.10.287.610 Helix hairpin bin - - 1 64 6.1E-29
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 65 313 4.7E-102
FunFam G3DSA:1.10.150.20:FF:000007 DNA ligase - - 440 514 3.9E-28
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 600 774 1.4E-32
CDD cd00114 LIGANc IPR013839 NAD-dependent DNA ligase, adenylation 5 315 0.0
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 1 612 0.0
Pfam PF03120 NAD-dependent DNA ligase OB-fold domain IPR004150 NAD-dependent DNA ligase, OB-fold 320 396 1.3E-35
SMART SM00532 ligaN3 IPR013840 NAD-dependent DNA ligase, N-terminal 2 458 0.0
Pfam PF14520 Helix-hairpin-helix domain - - 456 509 0.003
FunFam G3DSA:1.10.287.610:FF:000002 DNA ligase - - 1 63 3.1E-29
Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type 406 444 6.0E-10
Gene3D G3DSA:3.40.50.10190 BRCT domain IPR036420 BRCT domain superfamily 686 770 6.1E-24
Gene3D G3DSA:1.10.150.20 - - - 440 514 5.4E-27
Pfam PF00533 BRCA1 C Terminus (BRCT) domain IPR001357 BRCT domain 695 763 1.6E-10
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 456 475 3.0
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 601 686 1.26E-9
Pfam PF01653 NAD-dependent DNA ligase adenylation domain IPR013839 NAD-dependent DNA ligase, adenylation 2 315 2.3E-129
CDD cd17748 BRCT_DNA_ligase_like - - 698 765 5.53601E-24
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 3 314 1.42E-120
FunFam G3DSA:2.40.50.140:FF:000012 DNA ligase - - 315 388 5.9E-35
SUPERFAMILY SSF52113 BRCT domain IPR036420 BRCT domain superfamily 696 769 4.49E-17
PANTHER PTHR23389 CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 - - 16 752 4.2E-49
Pfam PF12826 Helix-hairpin-helix motif IPR041663 DisA/LigA, helix-hairpin-helix motif 520 583 3.0E-19
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 317 398 7.37E-29
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 490 509 820.0
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 522 541 140.0
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 402 593 1.63E-50
Gene3D G3DSA:6.20.10.30 - - - 389 439 1.7E-13

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.