Pseudomonas sp. URIL14HWK12:I4, H025_RS0111255
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I4 H025DRAFT_scaffold00006.6_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGACGCACTACGCGGTGGCCCTGCAATACGACCCGGAGAAGGGCGGAGTGGCGCCCCTGTTGCTGGCCAAGGGTACCGATTTCATTGCCTTGAAAATCC GCGAGATCGGCGTGGAGCACAAGGTACAGATCCTCGAGTCGCCAGCACTGGCGCGGGCGATCTATTACTCGACCGAAATTGAGCAGGAAATCCCCGCAGG CCTTTACCTGGCGGTAGCGCAGGTGCTGGCCTATGTGTTCCAGATCCGCCAGTACCGTGCGGGCAAGGGCAAACGGCCAGAGCCGCTGAAAGACGACCTG CCGATCCCGCCAGACCTGCGGCGTGATAGTTGATCTGTTCGCCTCGACACTTTCTGCGCCTATGAGACCGAGCGCCGCCCGCGCGGCGCTCGGTCTGACA GGCGCTAAATCCCTCAAGGCATACAAAGTTGGAAGGCTTCTTGCAAAGCCACGCCCAGGCGCCCCCTGTGCGTCAAAGTTTTGCATCAAGAGGACTCGCG
|
|
| DNA Sequence for Gene |
>H025_RS0111255
GTGGATCGCACTCAGTTAATCAGCAACGCCCGTAACAACCTGGCCGGGCTCGGCCGGGGCAACCTGGGTGTGCCGCTGTTGCTGCTGGTGATGTTGGCAA TGATGATGTTGCCGATTCCGCCGTTCCTGCTAGACGTGTTCTTCACCTTCAACATCGCGTTGTCGATCGTCGTGCTGCTGGTGTGCGTGTACGCCCTGCG CCCGCTCGACTTCGCCGCATTCCCGACCATCCTGCTGGTGGCCACGCTGTTGCGCCTGGCCCTGAACGTGGCCTCCACGCGTGTGGTCATGTTGCACGGC CAGGAGGGTCACGGCGCCGCCGGTAAAGTGATTCAGGCTTTCGGTGAGGTGGTAATCGGCGGCAACTACGTGGTCGGTGCCGTGGTGTTCGCCATCCTCA TGATCATCAACTTCGTGGTGGTGACCAAGGGTGCCGGACGTATCTCGGAAGTGAGTGCGCGTTTCACCCTCGACGCCATGCCCGGCAAGCAGATGGCCAT CGATGCCGACCTCAACGCCGGCCTGATCGACCAGGCCCAGGCCAAACACCGCCGTGCCGAGGTGGCGCAAGAGGCCGAGTTCTACGGCTCGATGGACGGT GCCAGCAAATTCGTCCGTGGGGACGCCATCGCCGGCTTGCTGATCCTGTTCATCAACCTGATCGGCGGCATGCTCATCGGCATGCTGCAGCACGGCATGA GCTTCGGTGACGCCGGCAAGGTGTACGCCCTGTTGACGATCGGTGACGGTTTGGTGGCGCAATTGCCATCACTGCTGCTGTCCACCGCCGCCGCGATCAT GGTCACCCGTGCCTCGGGCTCCGAGGACATGGGCAAGTTGATCAACCGGCAGATGTTCGACTCGCCCAAGGCCCTGGCGGTGTCCGGCGCGCTGATGATC GTCATGGGCCTGGTGCCGGGCATGCCGCACGTGGCCTTCCTCAGCCTCGGTCTGCTGGCCGGTGGTGGCGCCTACCTGGTATGGAAGAAGCAGCAAAAGA CCAAGCTGGAGGCGCAGCAAGAGGTGCAGCGTCAGCAGGATCTACTGCCCTCGCCTCAGCGTGCGCTGGAGACCAAGGAACTGGGCTGGGATGACGTCAC GCCGATCGACATGATCGGCCTGGAAGTCGGCTACCGGCTGATTCCGCTGGTCGACCGCAACCAGGGCGGCCAGTTGCTGGCACGGATCAAGGGTGTACGC AAGAAGCTGTCGCAGGACCTGGGTTTCCTCATGCCCACCGTGCACATTCGTGACAACCTCGACCTGCAGCCCAGCGCCTATCGCCTGACCCTGATGGGGG TGATCCTGGCCGAAGCGGAGATCTATCCGGACCGGGAGCTGGCGATCAACCCCGGGCAAGTGTTCGGCACCCTGAACGGCATTGCCGCGCGCGACCCGGC GTTTGGTCTGGAGGCGGTGTGGATCGACGTCGGCCAGCGTTCCCAGGCACAGTCGCTGGGCTACACCGTGGTTGACGCAAGTACCGTGGTTGCCACCCAC CTCAACCAGATCCTGCAGAAGCACTGCCACGAGCTGATTGGCCACGAAGAGGTTCAGCAACTGCTGCAGGTGCTGTCCAAGGCATCGCCTAAACTTGCAG AAGAGCTGGTGCCGGGTGTCATTTCCTTGTCGGGCCTGCTGAAGGTGCTGCAAGCGCTGTTGTCGGAACAGGTGCCGGTGCGCGATATTCGCAGTATTGC CGAAGCCATCGCGAACAACGCTGGCAAGAGTCAAGATACCGCCGCGCTGGTAGCGGCAGTGCGCGTCGGATTGTGTCGCGCCATCGTGCAAAGCATTGTA GGCGTTGAGTCGGAGCTGCCAGTGATTACCCTGGAGCCAAGGTTGGAACAGATTTTGCTCAATAGTCTGCAAAGGGCCGGGCAGGGTCAGGAAGAGGGTG TTCTTCTGGAGCCTAGCATGGCCGAGAAGCTGCAACGTTCGCTGATCGAAGCGGCCCAGCGCCAGGAAATGCAGGGCCAGCCGGCCATTCTTCTGGTCGC CGGCCCGATCCGCGCCATGCTGTCGCGTTTCGGTCGCCTGGCTGTACCGAATTTGCATGTTCTGGCGTATCAGGAAATACCTGACAACAAGCAAGTCACC ATCGTTGCCACCGTGGGCCCTAACGGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGTAGTGGATAATGCAAGTTAAGCGATTTTTCGCCGCCGATATGCGTCAGGCCATGAAACTGGTCCGTGATGAGCTGGGCGCCGATGCCGCGATCATTGG CAACCGCCGTATTGCCGGTGGTGTCGAACTGACGGCCGCGCTGGACTACAAGCTGTCCGCCCTGGCCCCACGCGTGCCCAACGCCGAGCTGGAAGAAGAG CTGCGCAAGACGCACACGCGCATCGCCACCGCTCAGGCCGAGCTGGACCACCGCCAGGACAGCAGTGACAACAACCGCCAATTGTTCGCCGGGCAGTCGC TGACCGCCGCCGAGCCGTTGATCGAGCCGCACGTCGATGCCCCCGAGGCGGCGACTGCTGCCCCGGCCGCTGCGCCAGTAGACCCGCGCCTGTTCGATGC CATGCGCTCCGAGCTGTCGGGCCTGCGCGAGTTGCTGGAAGTGCAGCTCGGGTCGCTGGCCTGGACCCAGTTGCAGGGCAGCAAGCCGCAGCAGGCCAAC
|
|
| Amino Acid Sequence |
>flagellar biosynthesis protein FlhA
MDRTQLISNARNNLAGLGRGNLGVPLLLLVMLAMMMLPIPPFLLDVFFTFNIALSIVVLLVCVYALRPLDFAAFPTILLVATLLRLALNVASTRVVMLHG QEGHGAAGKVIQAFGEVVIGGNYVVGAVVFAILMIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQAQAKHRRAEVAQEAEFYGSMDG ASKFVRGDAIAGLLILFINLIGGMLIGMLQHGMSFGDAGKVYALLTIGDGLVAQLPSLLLSTAAAIMVTRASGSEDMGKLINRQMFDSPKALAVSGALMI VMGLVPGMPHVAFLSLGLLAGGGAYLVWKKQQKTKLEAQQEVQRQQDLLPSPQRALETKELGWDDVTPIDMIGLEVGYRLIPLVDRNQGGQLLARIKGVR KKLSQDLGFLMPTVHIRDNLDLQPSAYRLTLMGVILAEAEIYPDRELAINPGQVFGTLNGIAARDPAFGLEAVWIDVGQRSQAQSLGYTVVDASTVVATH LNQILQKHCHELIGHEEVQQLLQVLSKASPKLAEELVPGVISLSGLLKVLQALLSEQVPVRDIRSIAEAIANNAGKSQDTAALVAAVRVGLCRAIVQSIV GVESELPVITLEPRLEQILLNSLQRAGQGQEEGVLLEPSMAEKLQRSLIEAAQRQEMQGQPAILLVAGPIRAMLSRFGRLAVPNLHVLAYQEIPDNKQVT IVATVGPNG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|