Pseudomonas sp. URIL14HWK12:I4, H025_RS0104345 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I4 H025DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGTGGGCCTCCACCTGGCGCAAGGCCTTGTCCGCCGGGCCGCCACTGCCAGGCTCATCCGGATCGCGGGCACCGGTCTCATCGAACAACGTATCCGGGC TCAGGTCATCGAGGGTGACATTGTCCTCGTGCAGGCTGTCGCTCAACGCCTCGCCGCCGGTCATGCCGCTTTCGGCGACACGCCGGGGCGGGTAATCCTC GGCAAGCTCCCGCGCCGGACGCTCGTCGCCGACACGCCCCTGGCGCTCATCACGGCGCTCGCTGAAATCCAGCTCGTGGACGCTGCCCATGCGGTCCTCG ATGTCGTCGATCTCAATGGGCGGTCTTGGGTCATTGGGTGTGGACATGAACGGTCTCCGTTAGTGGGCTTCACTCGGTCGACCCTCCCCAGCGGCAAATG ATTCAGAGTTTCTGCCAGCCCCGTCCCGCGTTTTTTTTGAACTCCTCGCTGCGCCGCCACCTCCCAATCCTGAGACCCGCAAACCCTTCCGGAGCCCGTC
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| DNA Sequence for Gene |
>H025_RS0104345
|ligD
ATGGCCAAGCCCCTGCAGGAGTACCAGCGCAAGCGCGACTTCAATGCCACGCCCGAGCCGGCTGGCAAACGCGCCCGCCCCCGCTCGGCCCATGCGCTGC AGTACTGCATCCAGAAGCACGATGCCAGCCACCTGCATTACGATTTTCGCCTGGAGCTCGACGGCACCCTCAAGAGCTGGGCCATCCCCAAGGGCCCCTC GCTGGATCCCAAGGTCCGGCGCCTGGCAGTGCATGTGGAGGATCATCCGCTGGACTACGCCAACTTCGAAGGCCGCATCCCTGAAGGCCACTACGGCGCC GGCGATGTGATCGTCTGGGACCGGGGTGTCTGGGAGCCCGAGGGCGATCCACGCGAAGCCTATGCAAAGGGCAAGCTGCGCTTTCGCCTGCAGGGCGAGA AGCTGTCGGGGGTCTGGAACCTGTTCCGCACTCACCTGGCAGGCAAGAAAGAGCAGTGGATGCTGGTCAAGTCCCATGACGGGCAGGCGCGCAGTGAAAC GGACTACAGGATTGTCGAGGCCCTGCCGGACAACGTGCTGAGCGAACGTACCCTGCCCCCGCGCAGCCCGGGCAAGGCGACCACCGTCAGGCACAAGCGG AAAACCGACCCCAAAGCCCTGCCGGATGCGCTCCAGCCGCAACTGGCCACGTTGGTCGCTTCCCCGCCAAGCGGCGATTGGCGCTACGAAGTCAAGTTCG ACGGCTACCGCATCCTGGCGCGTATCGACGGTGACGATATACGCCTGTTTACCCGTAATGGTCACGACTGGAGTGCGAAGATGCCCCGGCAGGTCGAGGC GCTCAAGGCCCTGGGGCTCGACTCGGCATGGCTGGACGGCGAGATGGTAGTGGTCGACGACAACGGCGTGGCCGACTTCCAGGCCTTGCAGAATGCCTTC GACACCGAGCATGACGAGCGCATCACCTACTACCTGTTCGACCTGCCCTGGCTGGGCGGTGAGAACCTGCGAGCACTGCCGCTGCAACAGCGCCGCGCAA CCCTCGCCCGGTTGCTGGAAGGCCATGCGTCGCAGGTAATCAGGTATTCCGCCGATTTTAAGGAGCCCGTCGCGTCATTGCTCGACAGCGCCTGCCGGCT GGAACTCGAAGGTTTGATCGGTAAACGTGCCGACAGCCCCTACGTTGGCCGGCGCAGTAGCGACTGGGTCAAGCTCAAGTGCAAGCAGCGTCAGGAATTC GTGATCGTCGGCTACACCGACCCCAAAGGCAGCCGCAGCGGCTTCGGCGCCCTGCTGCTCGCCCTTCACGACCACGGCAGCGGCCCGTTGCGCTATGCCG GCAAGGTCGGCACCGGTTTCAGCGCGGCCACCCTGGATAGCATTCACGCCCGCCTCAAGCCGTTGCAGACAGACAAATCGCCTTTGCCCAAACCACCCAC CGGTGCCGAAGCCCGCGGCGTGCATTGGCTCAAGCCACAGCTACTGGCAGAAGTCGCCTATGCCCAGATGACCCGCGAAGGCATCGTTCGCCACTCGGTG TTCCACGGCCTGCGTGACGACAAACCTGCCACCGCCATCGACTTGGAGCGAGCAATGCCCACCAAGCGCGCAGTACAGACAGAACCCGAGAACCTGGGCA CCCTGCGCCTGACCCACCCCGACCGCGTGGTAGACGCAACCACGGGTGCCACCAAGCGCGAGGTCGCCCAGTACTACGCTCAGGTCGCCGACTGGCTGCT GCCACAGCTCAAGGACCGGCCTGTAGCCCTTGTGCGGGCACCGGATGGTCTGGACGGCGAGCTGTTCTTCCAGAAAAACGCCGGCCAGCTGAATATTCCC AACGTGCTCAGCTACAACAAGGCCCAGGCCGGCCAGGCAGCCATGGTGCTCAACCGCGCCGACAGCCTGATGGGCGCGGTGCAGATGAACACGCTTGAAC TGCACACCTGGAATGCCACCACCAAGGATTTCGATAAACCCGACCGCTTTGTCCTCGACCTGGACCCTGACCCGGCGCTGCCCTGGAAAGCCATGCTCGA GGCCACCCAGCTGACCCTTACCCTGCTCGACGAACTAGGCCTGAAGGTATTTCTGAAGACCAGCGGCGGCAAGGGCATGCACCTCGTCGTACCGTTGACC CGACGCGCTGGCTGGGACGAGGTGAAAGACTTCAGCCATGCCTTGGTCAACCACATGGCCGGGCTGTTCCCTGACCGTCTCAGCGCCGTGTCCGGGCCGA AGAACCGGGTCGGGCGGATCTTCATCGACTACCTGCGTAACGGCAAGGGTGCCACCACCGCCGCCGCCTACTCGCTGCGGGCCCGCGAGGGCCTGCCGGT GTCGGTACCGATCTGGCGTGAGGAACTGAACCAGCTCAAGGGTGCCAACCAGTGGAACATCGGCAACCTTCACACGCGGCTTTCACAGGTCGAAGACCCG TGGGCCGAAATGGGCAAGACCCGCCAGTCGATCACGTTGCGTATGCGCAAGCAGTTGGGTATTGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGAACTGACCCACTTCGATTCGTTGTTACACCGCTTTGCTCACCGTTCGCAGGCTATCGAACGCGACGCTTCGCCAATAGAACTGATGCAGGCCCTGCA GGCCGAACGGCTCGACGTGCTCCCGTTACCCGGCCAGGGTTGCACGCTCGAACGCTGGCGCGCCCTGGCGCGGGTCGCCAGTTGCGATCTAAGCTTGGCC AAACTTTATGAAGGCCATACCGACGCCCTGGCAATCCTCGCCGAATGCGGTGCCGCCCAGCATGCCTCCGACGGCATTTGGGGCGTGTGGGCCGCCGAGC CGCCGGATGCCCGGGCATACATCGTCGAGCGGGACGGTGAACGCGTACGCCTGCAAGGCCGCAAGGCTTGGTGTTCGGGCGCGTTGCAGATCGACCGTGC CCTGCTGACTGCCTGGGAAGACGACCAGCCTCAGTTGGTGGCCATCGAATTGCCCCATCCCAGCCAGCGCATCCTGGCCGAGCATTGGCAGGCCGTAGGC
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MAKPLQEYQRKRDFNATPEPAGKRARPRSAHALQYCIQKHDASHLHYDFRLELDGTLKSWAIPKGPSLDPKVRRLAVHVEDHPLDYANFEGRIPEGHYGA GDVIVWDRGVWEPEGDPREAYAKGKLRFRLQGEKLSGVWNLFRTHLAGKKEQWMLVKSHDGQARSETDYRIVEALPDNVLSERTLPPRSPGKATTVRHKR KTDPKALPDALQPQLATLVASPPSGDWRYEVKFDGYRILARIDGDDIRLFTRNGHDWSAKMPRQVEALKALGLDSAWLDGEMVVVDDNGVADFQALQNAF DTEHDERITYYLFDLPWLGGENLRALPLQQRRATLARLLEGHASQVIRYSADFKEPVASLLDSACRLELEGLIGKRADSPYVGRRSSDWVKLKCKQRQEF VIVGYTDPKGSRSGFGALLLALHDHGSGPLRYAGKVGTGFSAATLDSIHARLKPLQTDKSPLPKPPTGAEARGVHWLKPQLLAEVAYAQMTREGIVRHSV FHGLRDDKPATAIDLERAMPTKRAVQTEPENLGTLRLTHPDRVVDATTGATKREVAQYYAQVADWLLPQLKDRPVALVRAPDGLDGELFFQKNAGQLNIP NVLSYNKAQAGQAAMVLNRADSLMGAVQMNTLELHTWNATTKDFDKPDRFVLDLDPDPALPWKAMLEATQLTLTLLDELGLKVFLKTSGGKGMHLVVPLT RRAGWDEVKDFSHALVNHMAGLFPDRLSAVSGPKNRVGRIFIDYLRNGKGATTAAAYSLRAREGLPVSVPIWREELNQLKGANQWNIGNLHTRLSQVEDP WAEMGKTRQSITLRMRKQLGIA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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