Pseudomonas sp. LAIL14HWK12:I7, D886_RS0125295
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I7 D886DRAFT_scaffold00008.8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGAGCAGTCGCCGTTGTGCTGGTTTGGTGGCTACCACGGCGTGCCGACCAAAGCCTTCGTCGGCAAGTATTACCTCAGCGGCGACACGGTCGAACTCAA TGCCGATGGCAGCATCAGCTTCGTGGGCCGCAGCGACGACGTGATCACCACCTCCGGCTACCGGGTTGGCCCGTTCGACGTGGAGAGCGCGCTGATCGAG CACCCGGCGGTGGTCGAGGCGGCCGTGGTCGGCAAGCCCGACCCTGAACGCACCGAGCTGATCAAAGCGTTCGTCGTACTGGCCAAAGGCGTGGAGGGCA CCCCCGAGCTGGAAGAAACCCTGCGCCAGCACGTGCGCAAGCGGCTGTACGCCCACGCCTACCCCCGCGAAATCGAATTCGTCAGCGAGCTGCCCAAGAC CCCGAGCGGCAAGCTGCAACGCTTCATCCTGCGCAACCAGGAAATCGCCAAACAACAGGCCCAACTGGCCGCTCACGCCAGTGCCTAAAGGAACGACACC
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| DNA Sequence for Gene |
>D886_RS0125295
ATGCAAATAGCCAACAAACACTTTATCGTCAGTGGCGCCGCATCCGGGCTGGGTGCCGCCACCGCACAGATGCTGATCGAGGCCGGTGCTAAGGTCATGC TGGTCGACCTCAATGCCCAGGCGGTCGAGGCTAAGGCGCGTGAACTGGGCGACAACGCCTGCTTCGCGGTCGCCGACATCAGCGACGAGCAGGCCGCCAA GGCTGCCGTCGACGCCGCCGTCAGCGCGTTTGGCAGCCTGCATGGGCTGGTCAACTGCGCCGGTATCGTCGGCGCCGAGAAAGTCCTGGGCAAACAAGGC CCGCATGGCCTGGCCAGTTTCGCCAAGGTCATCAACGTCAACCTGATCGGCAGCTTCAACCTGCTGCGCCTGACAGCGGCAGCGATGGCCGAGGGGCCGG CGGATGAGCATGGCGAGCGCGGGGTAATCATCAATACCGCCTCTATCGCTGCCTATGACGGGCAGATCGGCCAGGCCGCCTACGCGGCCTCCAAGGGCGC CATTGCCAGCCTCACGCTGCCAACGGCCCGTGAGCTGGCGCGTTTCGGCATCCGCGTGATGACCATCGCCCCGGGCATTTTCGAAACCCCGATGATGGCC GGCATGACCCAGGAAGTGCGTGACTCGCTGGCCGCTGGGGTGCCGTTCCCGCCGCGCCTGGGCCGCCCTCAGGAATACGCTGCACTGGCCCGCCACATCA TCGAGAACAGCATGCTCAACGGCGAGGTGATCCGCCTCGACGGCGCGCTGCGCATGGCTGCCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAGTAATGAACATGACCCTCGCCAACGACCCAATTGTCATCGTCAGCGCCGTGCGCACGCCCATGGGCGGCCTGCAGGGCGACCTCAAGAGCCTCACCG CACCGCAGCTGGGGGGCGCGGCGATTCGCGCTGCGGTCGAGCGCGCCGGCATCGAAGCCACCAGCGTCGAACAGGTACTGTTCGGTTGCGTGCTGCCGGC AGGCCTGGGCCAGGCCCCCGCGCGCCAGGCAGCGTTGGGCGCCGGCTTGGACAAACACACCACCTGTACCACCTTGAACAAGATGTGTGGTTCGGGCATG CAGGCCGCGATCATGGCCCATGACCTGCTGCTGGCCGGCAGCGCCGATGTGGTGGTGGCGGGTGGCATGGAGAGCATGACCAACGCGCCCTACCTGCTGG ACAAGGCCCGGGGTGGCTACCGCATGGGCCATGGCAAGATCATCGACCATATGTTCATGGATGGCCTCGAAGACGCCTACGACAAGGGCCGTTTGATGGG
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| Amino Acid Sequence |
>3-hydroxy-2-methylbutyryl-CoA dehydrogenase
MQIANKHFIVSGAASGLGAATAQMLIEAGAKVMLVDLNAQAVEAKARELGDNACFAVADISDEQAAKAAVDAAVSAFGSLHGLVNCAGIVGAEKVLGKQG PHGLASFAKVINVNLIGSFNLLRLTAAAMAEGPADEHGERGVIINTASIAAYDGQIGQAAYAASKGAIASLTLPTARELARFGIRVMTIAPGIFETPMMA GMTQEVRDSLAAGVPFPPRLGRPQEYAALARHIIENSMLNGEVIRLDGALRMAAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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