Pseudomonas sp. LAIL14HWK12:I7, D886_RS0121985
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I7 D886DRAFT_scaffold00002.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCACGTGTGTAGCGGCGCTCGAATTGGTGCCGGTGTTTCGCTTGGCCAGAACGTCTTTGTGGGTAACAAGGTTGTGATTGGTGATCACTGCAAGGTCCA AAACAACGTATCGGTCTACGACAATGTTACGTTGGAAGAGGGCGTATTTTGCGGGCCAAGCATGGTGTTTACCAATGTTTACAATCCACGCTCTTTGATC GAGCGCAAAGATCAGTACCGTGACACGCTGGTCAAGAAGGGCGCTACCTTGGGGGCCAATTGCACCATCGTCTGTGGGGTTACCATCGGTGAGTACGCGT TTGTGGGTGCGGGCGCGGTGATCAACAAAGATGTTCCCGCCTACGCCTTGATGGTCGGTGTACCAGCTCGACAGATTGGCTGGATGAGTGAATATGGCGA GCAACTGGAATTGAATGAGAGGGGGGAAGCCATTTGCTCCCATACGCGCGCTCGTTACGTGCTGCGCGACAATACTCTGACTAAATTGGATATTTGACCT
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| DNA Sequence for Gene |
>D886_RS0121985
ATGATTGAATTTATCGATCTCAAACGGCAGCAAGCCCTCATCAAGAGTAATATCGATGCTGGTATTCAGCGAGTACTGAGCCATGGTCAGTATATCCTGG GTCCAGAAGTAACTGAGTTGGAAGAGCGTTTGGCTACCTATGTCGGGGTCGATCATTGCATTACCTGCGCTAACGGAACTGATGCCTTGCAGATTGCACA GATGGCGTTAGGTATTGGTCCTGGGGATGAGGTGATTACCCCTGGCTTTACTTATATTGCGACTGCTGAGACCGTTGCATTGCTGGGTGCGACGCCTGTT TATGTCGATGTGGATAAACGTACTTGTAATTTAGACCCGGCGCTGCTGGAAGCAGCCATTACCCCGCGCACCAAGGCGATAGTGCCAGTGTCGCTTTATG GGCAGTGTGCCGACTTCGATGCGATCAATGAAATTGCAGCGAAGTACAATATTCCCGTTATTGAGGATGCGGCCCAAAGCTTTGGTGCTACTTATAAAGG GCGGCGCTCCTGCAGCTTGACGTCTATCGCATGCACGAGCTTCTTTCCAAGTAAACCGTTGGGCTGTTATGGTGATGGTGGCGCGATTTTCACCAACGAT CCCGAGTTGGCCCTTATCATTCGCCAGATCGCTCGGCACGGTCAAGAGAAGCGCTATCACCATGTGCGGGTGGGCGTTAATAGTCGGCTTGATACCCTGC AGGCCGCGATTCTTCTTGCCAAACTCGATATATTTGACAACGAAATAAAGCTTCGGCAAGCCGCTGCAGAAAAATATAATAACCTGCTGGGCTCGTTGGG CTCCGTAAAGCTTCCATTCATTGCTGAAGCGAATAGCTCAGTTTACGCACAGTTCACGATTCAGGTAGAAGGCCGGGAGCGCGTTCAAGCAGTGCTTAAA GAACGGGGCGTTCCTAGCGTCGTTCATTACCCAATACCCCTTAATAAACAAGTGGCTGTTGCGTCTGATGCTTATCTTCCATTGGGGGATGAACTGGCGA ATAAAGTGTTGAGCCTGCCGATGCATCCTTACCTCAGTGATGCGGATGTTGGTAAGGTGGTTGATGCTGTGGCGGCTGCCTGTGGAGCCGGTCAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGTCGTCCAGTACGTCTCGTCTTACTGGCGGGATATTTTTCTACAAGCGTCGGGCAATACCGTTGCGCAGGTGATAGGTGTTCTTGGGATTCCGTTATT ATCCAGGCTCTATGCCCCGCAGGAGTTCGCTGTTCAGAATATATTTCTCCAGCTGGTCATGTTCTTTGCAGGCATCATGACGTGGAGGTATGAATACTTC TTCCAGATGTTGAAAGGAGAGCAGCAGGCGCGCCTGCTGCTGTTGGGGCTGGCAAAGCTTGGTTTCATTACCGGTGCATTACTTACCGTGGTCATGTGCT TGTTTTCGGTGGAGATCGCACAGGCTTTATCAATCGAAGAGGGCGCTGAGTGGTTGGCGATTGCGCCCCTGAGTGCGTTCTTTGTGTCCATCGCACTCGC ATTTCAACACAATGCTCAGCGGGCGGGTGCTTACAAAGTGTCCGCGCTGTCAGAAGTGTGTGGTAAATCGGCCTATGTCGTATCGGGTGCCTTGTTGTCG
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| Amino Acid Sequence |
>aminotransferase DegT
MIEFIDLKRQQALIKSNIDAGIQRVLSHGQYILGPEVTELEERLATYVGVDHCITCANGTDALQIAQMALGIGPGDEVITPGFTYIATAETVALLGATPV YVDVDKRTCNLDPALLEAAITPRTKAIVPVSLYGQCADFDAINEIAAKYNIPVIEDAAQSFGATYKGRRSCSLTSIACTSFFPSKPLGCYGDGGAIFTND PELALIIRQIARHGQEKRYHHVRVGVNSRLDTLQAAILLAKLDIFDNEIKLRQAAAEKYNNLLGSLGSVKLPFIAEANSSVYAQFTIQVEGRERVQAVLK ERGVPSVVHYPIPLNKQVAVASDAYLPLGDELANKVLSLPMHPYLSDADVGKVVDAVAAACGAGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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