Strain | Pseudomonas sp. LAIL14HWK12:I7 D886DRAFT_scaffold00011.11_C, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCCCTCAAAATTCTGCCTTGGGGCAGCGCGCTGAAGAAAAATACTGCAAACCACTTGGCACAAGGCCTACAGGCCATACCCACAAAGTACGCACAACTTA TCCACAGGCGCTCGCCTTGCAAAGACCCTGATACCGCATTATCTTGTATCCCGATCGCAGCGAACCACTACATGTTGGGGTTCGTGCAAAATCACACACA AAAGTCAACCCGGCAAATTATTCGATTTTCCGGTTGAACTTCAGGTGATTTGACCAGCCATACCGCTCCAGCGGACTACTGAACTGCAACAGCTTTTGGG TACTGCCCAAAACCTTTGACTTCGGCCAGGGAGCGGCAAGCTATTGCCCCTTATTCCTGAGTCTGTCCCGAAGTCGGTACGCCCGAGCGGGCGGATGCGC GCGCATGACGCATCCCCGCACGGGTGATCGAGCAAGTGGACGGAACGGTGGGCGCCCAAAAGGCGCCTGTACAATATAGAAACTGTGGAGACACCCACCC
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DNA Sequence for Gene |
>D886_RS0114965
ATGCAAACCGACACAACTCGCGAGAACCCGCAGGCCCAGGTGCCGCAGGCCGCCGATTCCAACCAGGATCTGGCTGCCACCGCCCCCGGCCAACTGCGCG TGATCAAGCGCAACGGCACTGTCGTCCCCTACACCGACGACAAGATCACCGTGGCCATCACCAAGGCGTTCCTCGCAGTTGAAGGCGGCACCGCCGCCGC CTCGTCGCGTATCCACGACACCGTCGCGCGCCTGACCGAGCAGGTCACTGCCACGTTCAAGCGTCGCATGCCATCGGGTGGCACCATCCACATCGAAGAA ATCCAGGACCAGGTCGAACTGGCCCTGATGCGTGCCGGTGAGCAGAAAGTCGCCCGCGACTACGTGATCTACCGCGACCAGCGTGCAAAAGAGCGCGCCA CCCGCGCCAACACCGACGCCGTGGTCGAGCCGCACCCAAGCATCCGCATCACCTTGGCCGACGGCAGCCTGGCGCCGCTGGACATGGCGCGCCTGAACAC CATCATCAGCGAAGCCTGCGAAGGCCTGGCCGAAGTCGATGGCGACCTGATCCAGCGCGAAACCCTGAAGAACCTGTACGACGGCGTGGCCATCAAGGAC GTCAACACTGCCCTGGTGATGACCGCCCGTACCTTGGTCGAGCGCGAGCCGAACTACTCGTTCGTCACCGCCCGCCTGCTGATGGACACCCTGCGTGCCG AAGGCCTGGGCTTCCTCAGCGTTGCCGACAGCGCTACCCACCACGAGATGGCCGAGCTATACGCCAAGGCGCTGCCAGCCTACGTCGCCAAAGGTATCGA GTTCGAGCTGCTGAACCCGGCCCTGGCCGACTTCGACCTGGAAAAACTGGGCAAGGCGATCAACCACGAGCGCGACCAGCAGTTCACCTACCTGGGCCTG CAGACCCTGTACGACCGCTACTTCATCCACAAGGATGGCGTGCGCTTCGAGCTGCCACAGGTATTCTTCATGCGTGTGGCCATGGGCCTGGCGCTGGAAG AGAAAGAAAAAGAAGCCCGTGCAATCGAGTTCTACAACCTGTTGTCGTCCTTCGACTACATGGCCTCGACCCCGACCCTGTTCAACGCCGGTACCCTGCG CCCGCAGCTGTCCAGCTGCTACCTGACCACCGTGCCGGACGACCTGTCGGGCATCTACCACGCGATCCACGACAACGCCATGCTGTCGAAATTCGCCGGT GGCCTGGGCAACGACTGGACCCCTGTGCGTGCACTGGGCTCCTACATCAAGGGCACCAACGGTAAATCCCAGGGCGTCGTACCCTTCCTGAAAGTGGTCA ACGACACCGCCGTTGCGGTCAACCAGGGCGGCAAGCGCAAGGGCGCTGTCTGTGCCTACCTGGAAACCTGGCACCTGGACATCGAAGAATTCATCGAGCT GCGCAAGAACACCGGTGATGATCGTCGTCGTACCCACGACATGAACACCGCCAACTGGATCCCTGACCTGTTCATGAAGCGCGTCTTCGATGACGGCAAG TGGACCCTGTTCTCGCCCTCGGAAGTGCCTGATCTGCACGACCTGACCGGCAAGGCCTTCGAAGAGCGCTACGAGTACTACGAAGCCCTGACCGAGTACA ACAAGATCAAGGTGTTCAAGACCATCCAGGCCAAAGACCTGTGGCGCAAGATGCTGTCGATGCTGTTCGAGACCGGCCACCCATGGCTGACCTTCAAGGA CCCGTGCAACCTGCGTTCGCCGCAGCAGCACGTGGGCGTGGTCCACAGCTCGAACCTGTGCACCGAGATCACCCTGAACACCAACAAGGACGAGATCGCG GTCTGCAACCTGGGCTCGATCAACCTGCCGAACCACATCGTCGATGGCAAGCTGGACACCGCCAAACTGCAACGCACCGTGAACACTGCCGTGCGCATGC TCGACAACGTGATCGACATCAACTACTACTCGGTGCCGCAAGCGCGTAACTCGAACCTCAAGCACCGCCCTGTTGGCCTGGGCATCATGGGCTTCCAGGA CGCACTGTACCTGCAGCACATCGCCTACGGTTCCGACGCTGCGGTCGAGTTCGCCGACAAGTCGATGGAAGCGGTCAGCTACTTCGCGATCCAGGCGTCC TGCGACCTGGCCGACGAGCGTGGCGCCTACGAGACCTTCCAGGGTTCGCTGTGGTCCAAAGGCATCCTGCCGCTGGATTCGCAACAGATCCTGATCGAGG CCCGTGGCCAGAAGTACATCGACGTCGACCTGAACGAGACCCTGGACTGGGCGCCGGTGCGTGCTCGCGTACAAAAAGGTATTCGTAACTCGAACATCAT GGCCATCGCGCCGACCGCGACCATCGCCAACATCACTGGCGTGTCGCAGTCCATCGAGCCGACCTACCAGAACCTGTACGTGAAATCGAACCTGTCGGGC GAATTCACCGTGATCAACCCGTACCTGGTTCGCGACCTGAAAGCCCGCGGCCTGTGGGACTCGGTAATGATCAACGACCTGAAGTACTACGACGGTTCGG TGCAGCAGATCGAGCGTATCCCGCAAGAGCTGAAAGACCTGTACGCCACCGCGTTCGAAGTCGAGACCAAGTGGATCGTCGATGCTGCCTCGCGTCGCCA GAAGTGGATCGACCAGGCTCAGTCGCTGAACCTGTACATCGCTGGCGCTTCGGGCAAGAAGCTGGACGTGACCTACCGCATGGCCTGGTACCGTGGTCTG AAAACCACCTACTACCTCCGTGCCCTGGCTGCGACCAGCACCGAGAAGTCGACCATCAACACCGGCAAGCTCAACGCCGTTTCCAGCGGCGGCGACAGCG CCCCGGTTCAGGCCGCCGGCCCGGCACCTGTGCCAAAGGCGTGTGCGATCGACGAGCCTGACTGCGAAGCCTGCCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GGCCTGATGCCGCAAGGGGTGCCCACGGGCGCCCCTTGCGGCATTTTTGTATCCGCGCTCCAGAGAAGCCTTGCCCTTTGCCCACCGCTCGCGCGGCTCG GTAAAAGAGCAGGACCTCTCAAAAAAAGGATGTACCCCATGGCGCGGAAAAAAGTGGCAACTCGCAAAATTGGTCGCAATGCTGAAACCGGCCGCTTCAC CTCGGTCGAAGAAGCACGCAAGCACCCCAAGACACATGTGGTCGAGACCCTGCGCAAGCAGTGCAGCTAACACGTACTGTGTAGGAGCAGCCTCGTGCTG CGAAGAGGCCGGTGATGGCAGCGAAATGTGCTGTGCTTGCGCTGGCCTCTTCGCAGCACAAGGCTGCTCCTACATGACGCGCAAACCCCATATACAGTGT TTAACAAACAAAAAACCACAACATATAGTGCCAAACCTTCGTTTAGCGGCTACACTCTTGCCCGAACGAACGGCACACCCTTGGTGAACGGATGCGCGCC
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Amino Acid Sequence |
>ribonucleotide-diphosphate reductase subunit alpha
MQTDTTRENPQAQVPQAADSNQDLAATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEE IQDQVELALMRAGEQKVARDYVIYRDQRAKERATRANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRETLKNLYDGVAIKD VNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLSVADSATHHEMAELYAKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGL QTLYDRYFIHKDGVRFELPQVFFMRVAMGLALEEKEKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAG GLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGK WTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIA VCNLGSINLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGIMGFQDALYLQHIAYGSDAAVEFADKSMEAVSYFAIQAS CDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVDLNETLDWAPVRARVQKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSG EFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGL KTTYYLRALAATSTEKSTINTGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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